Hb_000529_020

Information

Type -
Description -
Location Contig529: 50281-54273
Sequence    

Annotation

kegg
ID ath:AT5G65430
description GRF8; 14-3-3-like protein GF14 kappa
nr
ID XP_012081645.1
description PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
swissprot
ID P48348
description 14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=1 SV=2
trembl
ID A0A067KD62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18684 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 14-3-3-like protein gf14 kappa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47222: 50349-54035
cDNA
(Sanger)
(ID:Location)		 006_O20.ab1: 50430-53272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_020 0.0 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
2 Hb_112798_020 0.0676225274 - - dnajc14 protein, putative [Ricinus communis]
3 Hb_002248_080 0.0834452888 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
4 Hb_000008_330 0.0905008877 - - 60S ribosomal protein L12A [Hevea brasiliensis]
5 Hb_000109_160 0.0905167238 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
6 Hb_004724_320 0.0913607549 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_007590_050 0.0921115706 - - NudC domain-containing protein, putative [Ricinus communis]
8 Hb_017491_030 0.0935593393 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
9 Hb_000796_210 0.0962287266 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004931_070 0.0967540247 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
11 Hb_000421_070 0.0977045068 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002685_170 0.0980628917 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
13 Hb_000034_100 0.099872077 - - dnajc14 protein, putative [Ricinus communis]
14 Hb_000275_170 0.1001179021 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
15 Hb_005694_110 0.1014045046 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
16 Hb_001610_110 0.1022279367 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_012762_020 0.1035421649 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
18 Hb_005276_210 0.1038558495 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
19 Hb_000621_080 0.1042211555 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005357_030 0.1063450595 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000529_020 Hb_000529_020 Hb_112798_020 Hb_112798_020 Hb_000529_020--Hb_112798_020 Hb_002248_080 Hb_002248_080 Hb_000529_020--Hb_002248_080 Hb_000008_330 Hb_000008_330 Hb_000529_020--Hb_000008_330 Hb_000109_160 Hb_000109_160 Hb_000529_020--Hb_000109_160 Hb_004724_320 Hb_004724_320 Hb_000529_020--Hb_004724_320 Hb_007590_050 Hb_007590_050 Hb_000529_020--Hb_007590_050 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_000152_380 Hb_000152_380 Hb_002248_080--Hb_000152_380 Hb_000096_070 Hb_000096_070 Hb_002248_080--Hb_000096_070 Hb_004310_150 Hb_004310_150 Hb_002248_080--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_002248_080--Hb_000780_230 Hb_031527_040 Hb_031527_040 Hb_002248_080--Hb_031527_040 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_000008_330--Hb_004724_320 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_005928_110 Hb_005928_110 Hb_000109_160--Hb_005928_110 Hb_000109_160--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_000109_160--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_000109_160--Hb_002685_170 Hb_020956_020 Hb_020956_020 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_004724_320--Hb_000861_070 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000521_260 Hb_000521_260 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_007590_050--Hb_005357_030 Hb_007590_050--Hb_002685_170 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.949 223.738 79.753 94.139 237.467 181.343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.788 246.116 131.462 125.416 37.6674

CAGE analysis