Hb_000529_030

Information

Type -
Description -
Location Contig529: 56189-59999
Sequence    

Annotation

kegg
ID cic:CICLE_v10026488mg
description hypothetical protein
nr
ID XP_012081646.1
description PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8LDD3
description Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana GN=CURT1D PE=1 SV=1
trembl
ID A0A067FAW5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028427mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47224: 56205-58782 , PASA_asmbl_47225: 58839-60010 , PASA_asmbl_47226: 56393-59992 , PASA_asmbl_47227: 56231-60061
cDNA
(Sanger)
(ID:Location)		 035_H17.ab1: 56231-60048

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_030 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000236_390 0.059236215 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
3 Hb_001195_480 0.0667904503 - - cop9 complex subunit, putative [Ricinus communis]
4 Hb_011512_070 0.0669399214 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
5 Hb_150651_040 0.0697266936 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
6 Hb_002226_060 0.0739546023 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
7 Hb_000656_240 0.0741609988 - - proteasome subunit alpha type, putative [Ricinus communis]
8 Hb_000465_390 0.0762784616 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
9 Hb_002534_150 0.0792794079 - - catalytic, putative [Ricinus communis]
10 Hb_003018_010 0.0798479483 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
11 Hb_006059_050 0.0798775894 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_000152_500 0.0799603033 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
13 Hb_001476_080 0.0801095457 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
14 Hb_000457_180 0.0821449589 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
15 Hb_001279_080 0.0824933215 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
16 Hb_001341_150 0.0827681147 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
17 Hb_003942_020 0.083895131 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_001534_120 0.0858589086 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
19 Hb_000001_060 0.0865555094 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
20 Hb_000633_020 0.0871344173 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_030 Hb_000529_030 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000529_030--Hb_011512_070 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_000236_390--Hb_001195_480 Hb_000633_020 Hb_000633_020 Hb_000236_390--Hb_000633_020 Hb_004453_170 Hb_004453_170 Hb_000236_390--Hb_004453_170 Hb_000622_180 Hb_000622_180 Hb_000236_390--Hb_000622_180 Hb_001016_150 Hb_001016_150 Hb_000236_390--Hb_001016_150 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_011512_070--Hb_000656_240 Hb_011512_070--Hb_002226_060 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_005245_080 Hb_005245_080 Hb_150651_040--Hb_005245_080 Hb_005391_040 Hb_005391_040 Hb_150651_040--Hb_005391_040 Hb_000457_180 Hb_000457_180 Hb_150651_040--Hb_000457_180 Hb_001279_080 Hb_001279_080 Hb_150651_040--Hb_001279_080 Hb_000465_390 Hb_000465_390 Hb_150651_040--Hb_000465_390 Hb_002226_060--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_002226_060--Hb_001279_080 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5485 12.047 21.3755 15.131 15.7679 14.6422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9936 38.6372 12.8703 12.8664 13.8374

CAGE analysis