Hb_000529_040

Information

Type -
Description -
Location Contig529: 62372-73376
Sequence    

Annotation

kegg
ID rcu:RCOM_0070220
description hypothetical protein
nr
ID XP_012081648.1
description PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SXH9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0070220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47228: 61746-73454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_040 0.0 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
2 Hb_086639_050 0.1166518846 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_000181_270 0.1334058477 - - ATP binding protein, putative [Ricinus communis]
4 Hb_080147_020 0.137908756 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
5 Hb_001117_080 0.1473150753 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_002518_200 0.1496915004 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_000567_090 0.150507754 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
8 Hb_002540_070 0.1509756451 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
9 Hb_172706_020 0.1512543452 - - PREDICTED: protein ABIL2 [Jatropha curcas]
10 Hb_001195_220 0.151380937 - - sugar transporter, putative [Ricinus communis]
11 Hb_001221_580 0.1517156602 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
12 Hb_127416_010 0.1531921751 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
13 Hb_004679_040 0.1579986491 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
14 Hb_001318_150 0.1588343266 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
15 Hb_001240_050 0.1602413894 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
16 Hb_023278_030 0.1608993455 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000098_150 0.1610521694 - - DNA helicase hus2, putative [Ricinus communis]
18 Hb_005701_110 0.1610819435 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
19 Hb_001040_060 0.164200042 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
20 Hb_010534_020 0.1647975862 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_040 Hb_000529_040 Hb_086639_050 Hb_086639_050 Hb_000529_040--Hb_086639_050 Hb_000181_270 Hb_000181_270 Hb_000529_040--Hb_000181_270 Hb_080147_020 Hb_080147_020 Hb_000529_040--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_000529_040--Hb_001117_080 Hb_002518_200 Hb_002518_200 Hb_000529_040--Hb_002518_200 Hb_000567_090 Hb_000567_090 Hb_000529_040--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_086639_050--Hb_002411_160 Hb_086639_050--Hb_080147_020 Hb_086639_050--Hb_001117_080 Hb_002249_170 Hb_002249_170 Hb_086639_050--Hb_002249_170 Hb_086639_050--Hb_000567_090 Hb_000111_390 Hb_000111_390 Hb_086639_050--Hb_000111_390 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_004920_050 Hb_004920_050 Hb_000181_270--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_000181_270--Hb_002518_200 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020 Hb_080147_020--Hb_000567_090 Hb_080147_020--Hb_002411_160 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_002432_050 Hb_002432_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_001117_080--Hb_000567_090 Hb_001117_080--Hb_002249_170 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_000567_090--Hb_001221_580 Hb_000567_090--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.333456 2.50069 6.41438 3.24165 0.156499 0.257075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.836616 0.608495 0.363281 3.02065 0.981168

CAGE analysis