Hb_000529_080

Information

Type -
Description -
Location Contig529: 154454-156356
Sequence    

Annotation

kegg
ID cit:102608173
description uncharacterized LOC102608173
nr
ID XP_012081653.1
description PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
swissprot
ID P32438
description IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1
trembl
ID A0A067K409
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18688 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s5 domain 2-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47234: 154454-156367
cDNA
(Sanger)
(ID:Location)		 016_E16.ab1: 154460-155457 , 023_I09.ab1: 154456-155200 , 038_M06.ab1: 154460-156206 , 045_C24.ab1: 154456-156227

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_080 0.0 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
2 Hb_000205_120 0.0613808749 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
3 Hb_000058_040 0.071378942 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
4 Hb_000265_150 0.0768944175 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_008887_050 0.0812048399 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_000976_270 0.0826964181 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_031939_010 0.0865211664 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_004447_030 0.0870227977 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
9 Hb_164010_020 0.0879995548 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
10 Hb_000236_280 0.0905205653 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
11 Hb_004450_060 0.0922207873 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
12 Hb_007643_050 0.0923407318 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001663_110 0.0926453507 - - RNA binding protein, putative [Ricinus communis]
14 Hb_012305_070 0.0928906483 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001014_010 0.0930416489 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
16 Hb_000290_020 0.0934267806 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
17 Hb_025557_020 0.0944109658 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
18 Hb_143629_010 0.097572817 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_011942_080 0.0979325756 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
20 Hb_003467_010 0.0982350719 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_080 Hb_000529_080 Hb_000205_120 Hb_000205_120 Hb_000529_080--Hb_000205_120 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000265_150 Hb_000265_150 Hb_000529_080--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_000205_120--Hb_000265_150 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_000205_120--Hb_008887_050 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_004450_060 Hb_004450_060 Hb_000058_040--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_000058_040--Hb_000088_200 Hb_003467_010 Hb_003467_010 Hb_000058_040--Hb_003467_010 Hb_001663_110 Hb_001663_110 Hb_000058_040--Hb_001663_110 Hb_005237_060 Hb_005237_060 Hb_000058_040--Hb_005237_060 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000976_270--Hb_001663_110 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.436 28.9904 35.0416 19.3673 97.3851 83.1926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.7044 48.3827 18.8395 24.5856 15.8073

CAGE analysis