Hb_000529_100

Information

Type -
Description -
Location Contig529: 159314-160198
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05980g
description POPTRDRAFT_767986; hypothetical protein
nr
ID XP_002313329.1
description hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
swissprot
ID Q9SV07
description Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1
trembl
ID B9HNV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_100 0.0 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
2 Hb_004243_010 0.1885751988 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
3 Hb_019715_020 0.2241944967 - - -
4 Hb_003041_060 0.2292114333 - - -
5 Hb_004712_180 0.2339144509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005054_070 0.2363773415 - - unnamed protein product [Vitis vinifera]
7 Hb_000048_090 0.2389845242 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
8 Hb_073367_010 0.2405972028 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
9 Hb_008442_010 0.2412357284 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
10 Hb_029888_020 0.2447824631 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
11 Hb_003043_070 0.2460725328 - - -
12 Hb_001021_230 0.2493481089 - - -
13 Hb_004241_040 0.2502635528 - - -
14 Hb_000101_090 0.2502838241 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
15 Hb_003746_060 0.2508501449 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
16 Hb_096490_020 0.2524483379 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
17 Hb_007632_090 0.2534768142 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
18 Hb_004502_050 0.2537778985 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
19 Hb_000065_080 0.254665753 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
20 Hb_004117_180 0.2546946719 - - -

Gene co-expression network

sample Hb_000529_100 Hb_000529_100 Hb_004243_010 Hb_004243_010 Hb_000529_100--Hb_004243_010 Hb_019715_020 Hb_019715_020 Hb_000529_100--Hb_019715_020 Hb_003041_060 Hb_003041_060 Hb_000529_100--Hb_003041_060 Hb_004712_180 Hb_004712_180 Hb_000529_100--Hb_004712_180 Hb_005054_070 Hb_005054_070 Hb_000529_100--Hb_005054_070 Hb_000048_090 Hb_000048_090 Hb_000529_100--Hb_000048_090 Hb_004243_010--Hb_005054_070 Hb_004241_040 Hb_004241_040 Hb_004243_010--Hb_004241_040 Hb_012305_040 Hb_012305_040 Hb_004243_010--Hb_012305_040 Hb_144898_010 Hb_144898_010 Hb_004243_010--Hb_144898_010 Hb_000176_120 Hb_000176_120 Hb_004243_010--Hb_000176_120 Hb_019715_020--Hb_003041_060 Hb_001021_230 Hb_001021_230 Hb_019715_020--Hb_001021_230 Hb_000268_020 Hb_000268_020 Hb_019715_020--Hb_000268_020 Hb_015807_010 Hb_015807_010 Hb_019715_020--Hb_015807_010 Hb_025299_010 Hb_025299_010 Hb_019715_020--Hb_025299_010 Hb_003912_090 Hb_003912_090 Hb_003041_060--Hb_003912_090 Hb_003041_060--Hb_001021_230 Hb_000840_270 Hb_000840_270 Hb_003041_060--Hb_000840_270 Hb_029921_040 Hb_029921_040 Hb_003041_060--Hb_029921_040 Hb_023732_090 Hb_023732_090 Hb_003041_060--Hb_023732_090 Hb_073367_010 Hb_073367_010 Hb_004712_180--Hb_073367_010 Hb_000065_080 Hb_000065_080 Hb_004712_180--Hb_000065_080 Hb_011174_010 Hb_011174_010 Hb_004712_180--Hb_011174_010 Hb_029888_020 Hb_029888_020 Hb_004712_180--Hb_029888_020 Hb_086703_010 Hb_086703_010 Hb_004712_180--Hb_086703_010 Hb_000622_100 Hb_000622_100 Hb_004712_180--Hb_000622_100 Hb_005054_070--Hb_000176_120 Hb_136731_010 Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_005054_070--Hb_004241_040 Hb_005054_070--Hb_144898_010 Hb_162999_010 Hb_162999_010 Hb_000048_090--Hb_162999_010 Hb_004025_030 Hb_004025_030 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_126398_010 Hb_126398_010 Hb_000048_090--Hb_126398_010 Hb_002153_010 Hb_002153_010 Hb_000048_090--Hb_002153_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322962 0 0.0409624 0.0230316 0.0724765 0.157583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118295 0.0930271 0 0.0375327 0

CAGE analysis