Hb_000529_140

Information

Type -
Description -
Location Contig529: 202648-216009
Sequence    

Annotation

kegg
ID rcu:RCOM_0069580
description hypothetical protein
nr
ID XP_002530685.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID B9SXG6
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0069580 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kca2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47235: 172236-215987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008511_140 0.1023554285 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
3 Hb_000390_030 0.1171335428 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
4 Hb_005523_010 0.1214283573 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
5 Hb_010757_030 0.1224590243 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000495_080 0.1276153829 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
7 Hb_000640_260 0.1286042429 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
8 Hb_052946_010 0.1290740153 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
9 Hb_000404_040 0.1334460587 - - conserved hypothetical protein [Ricinus communis]
10 Hb_021409_190 0.1398324195 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
11 Hb_016760_010 0.1421233474 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_030131_030 0.1449020748 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
13 Hb_006846_080 0.1500804399 - - calnexin, putative [Ricinus communis]
14 Hb_002681_080 0.1506199713 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
15 Hb_000022_140 0.1508304313 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
16 Hb_000676_200 0.1520835999 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
17 Hb_173808_010 0.1541227374 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_000739_210 0.154246816 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
19 Hb_000352_220 0.1543770565 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_011616_020 0.1549242828 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]

Gene co-expression network

sample Hb_000529_140 Hb_000529_140 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_005523_010 Hb_005523_010 Hb_000529_140--Hb_005523_010 Hb_010757_030 Hb_010757_030 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_010288_060 Hb_010288_060 Hb_000390_030--Hb_010288_060 Hb_010175_030 Hb_010175_030 Hb_000390_030--Hb_010175_030 Hb_000390_030--Hb_008511_140 Hb_009252_010 Hb_009252_010 Hb_000390_030--Hb_009252_010 Hb_000390_030--Hb_000495_080 Hb_011616_020 Hb_011616_020 Hb_005523_010--Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_005523_010--Hb_005250_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_000352_220 Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_007002_010 Hb_007002_010 Hb_000495_080--Hb_007002_010 Hb_000495_080--Hb_000640_260 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000640_260--Hb_000189_250 Hb_000640_260--Hb_003029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36682 4.37962 3.95909 6.58268 2.96972 4.46212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76223 0.907446 5.01567 7.31703 25.3938

CAGE analysis