Hb_000529_150

Information

Type -
Description -
Location Contig529: 221082-225863
Sequence    

Annotation

kegg
ID rcu:RCOM_1054970
description protein with unknown function
nr
ID XP_002533685.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LXC0
description Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1
trembl
ID B9T616
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1054970 PE=4 SV=1
Gene Ontology
ID GO:0048046
description guanosine nucleotide diphosphate dissociation inhibitor at5g09550-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47236: 224850-225287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_150 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000510_230 0.1599533115 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
3 Hb_031822_010 0.1877232346 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
4 Hb_000394_110 0.1948250539 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_003147_070 0.1979420519 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
6 Hb_002909_020 0.1995529655 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
7 Hb_118282_010 0.2042004882 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
8 Hb_005375_050 0.2047161288 - - inorganic pyrophosphatase, putative [Ricinus communis]
9 Hb_000173_050 0.205135376 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
10 Hb_007741_130 0.2068157037 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
11 Hb_000046_310 0.2070243062 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
12 Hb_009486_210 0.2079108329 - - -
13 Hb_004920_070 0.2104713714 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_005181_160 0.2114966678 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
15 Hb_000282_050 0.2143341396 - - calcineurin B, putative [Ricinus communis]
16 Hb_001771_080 0.216013931 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
17 Hb_008768_020 0.2184643017 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
18 Hb_033594_040 0.219980343 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
19 Hb_006970_140 0.2200158206 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
20 Hb_089140_090 0.220712016 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000529_150 Hb_000529_150 Hb_000510_230 Hb_000510_230 Hb_000529_150--Hb_000510_230 Hb_031822_010 Hb_031822_010 Hb_000529_150--Hb_031822_010 Hb_000394_110 Hb_000394_110 Hb_000529_150--Hb_000394_110 Hb_003147_070 Hb_003147_070 Hb_000529_150--Hb_003147_070 Hb_002909_020 Hb_002909_020 Hb_000529_150--Hb_002909_020 Hb_118282_010 Hb_118282_010 Hb_000529_150--Hb_118282_010 Hb_000510_230--Hb_000394_110 Hb_000510_230--Hb_003147_070 Hb_004920_070 Hb_004920_070 Hb_000510_230--Hb_004920_070 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_000069_240 Hb_000069_240 Hb_000510_230--Hb_000069_240 Hb_000072_190 Hb_000072_190 Hb_031822_010--Hb_000072_190 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_031822_010--Hb_013358_020 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_012545_030 Hb_012545_030 Hb_003147_070--Hb_012545_030 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_001863_130 Hb_001863_130 Hb_002909_020--Hb_001863_130 Hb_003126_130 Hb_003126_130 Hb_002909_020--Hb_003126_130 Hb_000832_190 Hb_000832_190 Hb_002909_020--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_002909_020--Hb_001377_450 Hb_004984_030 Hb_004984_030 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120936 0.332154 1.00471 0.503047 0.0606329 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356632 0.476941 0.314774 0.0673055 0.0583919

CAGE analysis