Hb_000529_160

Information

Type -
Description -
Location Contig529: 232195-237540
Sequence    

Annotation

kegg
ID rcu:RCOM_1054850
description hypothetical protein
nr
ID XP_011021848.1
description PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9T614
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1054850 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47238: 232483-237643 , PASA_asmbl_47240: 236607-236819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_160 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
2 Hb_000365_310 0.0724166837 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_000299_040 0.0780461057 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
4 Hb_010120_030 0.08427156 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_000179_170 0.0870421797 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
6 Hb_076787_010 0.0875411865 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
7 Hb_022137_060 0.0902390043 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
8 Hb_001252_100 0.0902871062 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
9 Hb_005016_170 0.0942108212 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006663_100 0.0961628218 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
11 Hb_003502_080 0.1012734942 - - vacuolar protein sorting, putative [Ricinus communis]
12 Hb_012760_170 0.1016739418 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
13 Hb_000120_500 0.1028453563 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_033843_010 0.104716865 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
15 Hb_001855_010 0.108202919 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
16 Hb_000009_170 0.1082457292 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
17 Hb_005662_030 0.1094671472 - - protein with unknown function [Ricinus communis]
18 Hb_005063_040 0.1102803076 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
19 Hb_003656_130 0.1113506387 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
20 Hb_001689_020 0.1124477244 - - hypothetical protein JCGZ_10660 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_160 Hb_000529_160 Hb_000365_310 Hb_000365_310 Hb_000529_160--Hb_000365_310 Hb_000299_040 Hb_000299_040 Hb_000529_160--Hb_000299_040 Hb_010120_030 Hb_010120_030 Hb_000529_160--Hb_010120_030 Hb_000179_170 Hb_000179_170 Hb_000529_160--Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000529_160--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000529_160--Hb_022137_060 Hb_000365_310--Hb_010120_030 Hb_002112_040 Hb_002112_040 Hb_000365_310--Hb_002112_040 Hb_000363_500 Hb_000363_500 Hb_000365_310--Hb_000363_500 Hb_002616_050 Hb_002616_050 Hb_000365_310--Hb_002616_050 Hb_001998_230 Hb_001998_230 Hb_000365_310--Hb_001998_230 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_003656_130 Hb_003656_130 Hb_010120_030--Hb_003656_130 Hb_010120_030--Hb_022137_060 Hb_000012_090 Hb_000012_090 Hb_010120_030--Hb_000012_090 Hb_000049_040 Hb_000049_040 Hb_010120_030--Hb_000049_040 Hb_000179_170--Hb_076787_010 Hb_000179_170--Hb_022137_060 Hb_002400_220 Hb_002400_220 Hb_000179_170--Hb_002400_220 Hb_150360_030 Hb_150360_030 Hb_000179_170--Hb_150360_030 Hb_001135_050 Hb_001135_050 Hb_000179_170--Hb_001135_050 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_000085_060 Hb_000085_060 Hb_076787_010--Hb_000085_060 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
287.471 32.7564 62.2083 134.686 215.467 271.965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
250.458 127.497 144.327 77.61 67.0729

CAGE analysis