Hb_000529_190

Information

Type -
Description -
Location Contig529: 267384-272114
Sequence    

Annotation

kegg
ID tcc:TCM_000984
description Haloacid dehalogenase-like hydrolase superfamily protein isoform 1
nr
ID XP_012081665.1
description PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
swissprot
ID Q86V88
description Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1
trembl
ID A0A067KC02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18700 PE=4 SV=1
Gene Ontology
ID GO:0016791
description magnesium-dependent phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47245: 266344-266587 , PASA_asmbl_47246: 267407-271940 , PASA_asmbl_47247: 267433-271876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_190 0.0 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
2 Hb_002214_040 0.040310719 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_063716_050 0.0568434373 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
4 Hb_000103_560 0.0600406139 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_001789_070 0.061147726 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
6 Hb_001604_080 0.0613683002 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
7 Hb_000832_140 0.0615379156 - - actin depolymerizing factor 4 [Hevea brasiliensis]
8 Hb_000815_040 0.0621175028 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
9 Hb_006541_030 0.0668013419 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_002477_070 0.0668224645 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
11 Hb_118707_030 0.067910996 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
12 Hb_000926_250 0.0679290461 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_012799_160 0.0682448774 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
14 Hb_000103_090 0.0682865857 - - PREDICTED: protein RDM1 [Jatropha curcas]
15 Hb_002890_140 0.0704479902 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
16 Hb_000329_030 0.0716371027 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
17 Hb_000243_030 0.0743562074 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
18 Hb_009838_080 0.0748265175 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_004440_090 0.0748672018 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
20 Hb_000046_280 0.0758898997 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000529_190 Hb_000529_190 Hb_002214_040 Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000832_140 Hb_000832_140 Hb_000529_190--Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_063716_050--Hb_000832_140 Hb_063716_050--Hb_001604_080 Hb_000103_560--Hb_000832_140 Hb_000103_560--Hb_001604_080 Hb_000103_560--Hb_000815_040 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_012799_160 Hb_012799_160 Hb_001789_070--Hb_012799_160 Hb_025240_040 Hb_025240_040 Hb_001789_070--Hb_025240_040 Hb_000103_090 Hb_000103_090 Hb_001789_070--Hb_000103_090 Hb_003125_010 Hb_003125_010 Hb_001789_070--Hb_003125_010 Hb_001789_070--Hb_002214_040 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_001604_080--Hb_000815_040 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_000832_140--Hb_003050_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7735 6.1957 12.6255 16.0765 24.4361 32.6895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9883 35.9747 26.9399 15.1127 12.4235

CAGE analysis