Hb_000529_260

Information

Type -
Description -
Location Contig529: 308837-319546
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13660g
description hypothetical protein
nr
ID XP_012081672.1
description PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
swissprot
ID Q9LSM5
description Protein SGT1 homolog At5g65490 OS=Arabidopsis thaliana GN=At5g65490 PE=1 SV=1
trembl
ID A0A067KC12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47259: 308845-319414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_260 0.0 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
2 Hb_002221_050 0.0543795436 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
3 Hb_000424_010 0.0550542977 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_007885_070 0.0609986927 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
5 Hb_019153_020 0.0619441021 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_000510_310 0.0665160215 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_000320_200 0.0677329324 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
8 Hb_000072_350 0.068064623 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
9 Hb_175338_020 0.0702537739 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
10 Hb_000417_160 0.0704867113 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
11 Hb_001541_020 0.0721981929 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
12 Hb_010315_090 0.073677644 - - suppressor of ty, putative [Ricinus communis]
13 Hb_022408_010 0.0739256628 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_001718_090 0.0743757394 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
15 Hb_000743_040 0.0745795821 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_003777_160 0.0753482878 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_001502_060 0.0756813533 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
18 Hb_004162_280 0.0762087067 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
19 Hb_000035_040 0.076987648 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
20 Hb_000120_610 0.0778800798 - - mitotic control protein dis3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000529_260 Hb_000529_260 Hb_002221_050 Hb_002221_050 Hb_000529_260--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_000529_260--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000320_200 Hb_000320_200 Hb_000529_260--Hb_000320_200 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_007885_070 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_007885_070--Hb_019153_020 Hb_007885_070--Hb_000320_380 Hb_007885_070--Hb_000424_010 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_019153_020--Hb_000417_160 Hb_019153_020--Hb_002221_050 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.76 18.6699 7.17416 6.37679 29.7553 22.8995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4564 7.35734 12.3611 13.7663 9.52674

CAGE analysis