Hb_000529_280

Information

Type -
Description -
Location Contig529: 354771-358343
Sequence    

Annotation

kegg
ID rcu:RCOM_0812540
description hypothetical protein
nr
ID XP_012087493.1
description PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
swissprot
ID O23193
description CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2
trembl
ID A0A067JZM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23987 PE=4 SV=1
Gene Ontology
ID GO:0044763
description cbs domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47260: 354826-358468 , PASA_asmbl_47261: 354826-358306 , PASA_asmbl_47262: 357618-357783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_280 0.0 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
2 Hb_001728_020 0.107750031 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
3 Hb_000723_230 0.1268951102 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
4 Hb_000645_200 0.1282171177 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
5 Hb_000139_470 0.1309239296 - - Dual specificity protein phosphatase, putative [Ricinus communis]
6 Hb_172632_050 0.131640277 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
7 Hb_093458_010 0.1318135677 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
8 Hb_006637_030 0.1325682804 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_040819_010 0.1353198209 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_027654_080 0.1358160721 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
11 Hb_006060_020 0.1364121264 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
12 Hb_098315_020 0.13859419 - - hypothetical protein M569_15712 [Genlisea aurea]
13 Hb_001728_040 0.13877736 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
14 Hb_002060_010 0.1407473607 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_015057_020 0.1469767284 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
16 Hb_012725_120 0.1480358224 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
17 Hb_004005_020 0.1481128894 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_002693_030 0.1496088612 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
19 Hb_000732_190 0.1510438854 - - structural molecule, putative [Ricinus communis]
20 Hb_005245_120 0.1521685894 - - XPA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000529_280 Hb_000529_280 Hb_001728_020 Hb_001728_020 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_172632_050 Hb_172632_050 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_006637_030 Hb_006637_030 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_000723_230--Hb_006060_020 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000645_200--Hb_093458_010 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080 Hb_000139_470--Hb_001728_040 Hb_000847_060 Hb_000847_060 Hb_000139_470--Hb_000847_060 Hb_002301_160 Hb_002301_160 Hb_000139_470--Hb_002301_160 Hb_006538_090 Hb_006538_090 Hb_000139_470--Hb_006538_090 Hb_000155_160 Hb_000155_160 Hb_000139_470--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000139_470--Hb_002239_050 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_172632_050--Hb_000139_470 Hb_003602_060 Hb_003602_060 Hb_093458_010--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_093458_010--Hb_001767_060 Hb_015807_160 Hb_015807_160 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_001863_070 Hb_001863_070 Hb_093458_010--Hb_001863_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3197 7.86755 9.85298 9.89108 0.750699 1.67866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2933 12.5888 3.74872 6.98664 4.43918

CAGE analysis