Hb_000531_020

Information

Type -
Description -
Location Contig531: 32926-34755
Sequence    

Annotation

kegg
ID pda:103722936
description uncharacterized protein At4g28440-like
nr
ID XP_011029059.1
description PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
swissprot
ID O49453
description Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1
trembl
ID Q9SGZ2
description F20B24.1 OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47387: 33099-34724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000531_020 0.0 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
2 Hb_000025_530 0.0601039934 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
3 Hb_000260_080 0.0726250102 - - thioredoxin H-type 1 [Hevea brasiliensis]
4 Hb_000883_050 0.073276092 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
5 Hb_000703_140 0.0741088037 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
6 Hb_000260_050 0.0799887437 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
7 Hb_001828_090 0.0808564554 - - prohibitin, putative [Ricinus communis]
8 Hb_007101_150 0.0822483906 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
9 Hb_004645_050 0.0827365359 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
10 Hb_000970_010 0.0858812935 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
11 Hb_000483_160 0.0868748026 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
12 Hb_007101_130 0.0881329617 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000487_250 0.0887924443 - - 60S ribosomal protein L27e, putative [Ricinus communis]
14 Hb_000376_050 0.088879838 - - polyadenylate-binding protein, putative [Ricinus communis]
15 Hb_000221_220 0.0895285791 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
16 Hb_023732_070 0.0898764857 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_027472_180 0.0919214286 - - hypothetical protein L484_016229 [Morus notabilis]
18 Hb_001235_210 0.0933558306 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000977_080 0.0937578461 - - type II inositol 5-phosphatase, putative [Ricinus communis]
20 Hb_000189_270 0.0937664652 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000531_020 Hb_000531_020 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000260_080 Hb_000260_080 Hb_000531_020--Hb_000260_080 Hb_000883_050 Hb_000883_050 Hb_000531_020--Hb_000883_050 Hb_000703_140 Hb_000703_140 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_000260_080--Hb_000703_140 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_011794_070 Hb_011794_070 Hb_000260_080--Hb_011794_070 Hb_000260_080--Hb_000883_050 Hb_000883_050--Hb_011794_070 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000883_050--Hb_000703_140 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_000260_050--Hb_002477_240 Hb_000977_080 Hb_000977_080 Hb_000260_050--Hb_000977_080 Hb_001754_150 Hb_001754_150 Hb_000260_050--Hb_001754_150 Hb_007101_150 Hb_007101_150 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001512_070 Hb_001512_070 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.323 36.3261 36.5677 28.4168 116.794 139.403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.863 280.215 140.265 42.5714 21.7552

CAGE analysis