Hb_000532_020

Information

Type -
Description -
Location Contig532: 20441-23470
Sequence    

Annotation

kegg
ID mdm:103419231
description tubulin beta chain
nr
ID ABO93613.1
description beta-tubulin [Bouteloua eriopoda]
swissprot
ID P25862
description Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1
trembl
ID A4UHP7
description Beta-tubulin (Fragment) OS=Bouteloua eriopoda PE=4 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-8 chain -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_020 0.0 - - beta-tubulin [Bouteloua eriopoda]
2 Hb_000200_140 0.0746327333 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
3 Hb_140171_010 0.1163737716 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
4 Hb_004204_080 0.1164943095 - - diacylglycerol kinase, theta, putative [Ricinus communis]
5 Hb_008643_060 0.1179140609 - - unnamed protein product [Coffea canephora]
6 Hb_001083_030 0.1183562895 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
7 Hb_002890_030 0.1211150981 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
8 Hb_000270_780 0.1214052243 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
9 Hb_000465_470 0.1236340354 - - unknown [Picea sitchensis]
10 Hb_000861_070 0.1253660579 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001616_050 0.1286444743 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_165350_010 0.1289472433 - - unnamed protein product [Triticum aestivum]
13 Hb_000406_040 0.1318619302 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
14 Hb_002301_220 0.132681468 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
15 Hb_000465_170 0.1328568553 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
16 Hb_005730_030 0.1331639463 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_000009_210 0.1337371691 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
18 Hb_033834_010 0.1340595575 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_009557_040 0.1348016668 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
20 Hb_160233_010 0.1353250537 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]

Gene co-expression network

sample Hb_000532_020 Hb_000532_020 Hb_000200_140 Hb_000200_140 Hb_000532_020--Hb_000200_140 Hb_140171_010 Hb_140171_010 Hb_000532_020--Hb_140171_010 Hb_004204_080 Hb_004204_080 Hb_000532_020--Hb_004204_080 Hb_008643_060 Hb_008643_060 Hb_000532_020--Hb_008643_060 Hb_001083_030 Hb_001083_030 Hb_000532_020--Hb_001083_030 Hb_002890_030 Hb_002890_030 Hb_000532_020--Hb_002890_030 Hb_000200_140--Hb_002890_030 Hb_000200_140--Hb_004204_080 Hb_002341_030 Hb_002341_030 Hb_000200_140--Hb_002341_030 Hb_005839_120 Hb_005839_120 Hb_000200_140--Hb_005839_120 Hb_000200_140--Hb_008643_060 Hb_005730_030 Hb_005730_030 Hb_140171_010--Hb_005730_030 Hb_002255_050 Hb_002255_050 Hb_140171_010--Hb_002255_050 Hb_007188_070 Hb_007188_070 Hb_140171_010--Hb_007188_070 Hb_002928_060 Hb_002928_060 Hb_140171_010--Hb_002928_060 Hb_033834_010 Hb_033834_010 Hb_140171_010--Hb_033834_010 Hb_140171_010--Hb_004204_080 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_008643_060--Hb_004204_080 Hb_002601_120 Hb_002601_120 Hb_008643_060--Hb_002601_120 Hb_000270_780 Hb_000270_780 Hb_008643_060--Hb_000270_780 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_008643_060--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_008643_060--Hb_000861_070 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_002890_030--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_002890_030--Hb_004204_080 Hb_003097_190 Hb_003097_190 Hb_002890_030--Hb_003097_190 Hb_001057_010 Hb_001057_010 Hb_002890_030--Hb_001057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21237 2.44169 1.75491 0.631544 3.93263 3.13258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18633 1.30668 3.1178 1.09837 0.293427

CAGE analysis