Hb_000532_060

Information

Type -
Description -
Location Contig532: 76490-81046
Sequence    

Annotation

kegg
ID rcu:RCOM_1686400
description copper-transporting atpase p-type, putative (EC:3.6.3.4)
nr
ID XP_002509783.1
description copper-transporting atpase p-type, putative [Ricinus communis]
swissprot
ID Q9SH30
description Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=1 SV=2
trembl
ID B9RC99
description Copper-transporting atpase p-type, putative OS=Ricinus communis GN=RCOM_1686400 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable copper-transporting atpase hma5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_060 0.0 - - copper-transporting atpase p-type, putative [Ricinus communis]
2 Hb_000345_190 0.080354124 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
3 Hb_000170_230 0.0805467651 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
4 Hb_046117_050 0.0858995741 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
5 Hb_003376_340 0.0987519495 - - conserved hypothetical protein [Ricinus communis]
6 Hb_150643_010 0.1060892046 - - lipid binding protein, putative [Ricinus communis]
7 Hb_001487_020 0.1087170794 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
8 Hb_012055_100 0.114103595 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
9 Hb_047690_010 0.1145508492 - - Phosphoprotein phosphatase [Theobroma cacao]
10 Hb_004586_380 0.1201826286 - - purine transporter, putative [Ricinus communis]
11 Hb_135811_020 0.1251909807 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
12 Hb_006351_080 0.1281186246 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
13 Hb_007785_020 0.1315297812 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_045810_010 0.1320217982 - - PREDICTED: laccase-12-like [Jatropha curcas]
15 Hb_001691_190 0.1323267917 - - conserved hypothetical protein [Ricinus communis]
16 Hb_128912_010 0.1337953509 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
17 Hb_005081_080 0.1351577073 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
18 Hb_000260_320 0.136674265 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
19 Hb_000940_020 0.1430971005 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
20 Hb_000333_130 0.1458859966 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000532_060 Hb_000532_060 Hb_000345_190 Hb_000345_190 Hb_000532_060--Hb_000345_190 Hb_000170_230 Hb_000170_230 Hb_000532_060--Hb_000170_230 Hb_046117_050 Hb_046117_050 Hb_000532_060--Hb_046117_050 Hb_003376_340 Hb_003376_340 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_000532_060--Hb_001487_020 Hb_000345_190--Hb_046117_050 Hb_000345_190--Hb_000170_230 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_000170_230--Hb_046117_050 Hb_001691_190 Hb_001691_190 Hb_000170_230--Hb_001691_190 Hb_000170_230--Hb_001487_020 Hb_005081_080 Hb_005081_080 Hb_000170_230--Hb_005081_080 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_003376_340 Hb_046117_050--Hb_005081_080 Hb_003376_340--Hb_000345_190 Hb_011909_030 Hb_011909_030 Hb_003376_340--Hb_011909_030 Hb_047690_010 Hb_047690_010 Hb_003376_340--Hb_047690_010 Hb_003376_340--Hb_150643_010 Hb_150643_010--Hb_047690_010 Hb_150643_010--Hb_001487_020 Hb_150643_010--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020 Hb_001487_020--Hb_047690_010 Hb_001487_020--Hb_135811_020 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_005081_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00632082 3.55239 0.0521982 0.348639 0.0122415 0.00585489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0143325 0 0 1.26142 0

CAGE analysis