Hb_000532_070

Information

Type -
Description -
Location Contig532: 83380-86888
Sequence    

Annotation

kegg
ID rcu:RCOM_0347880
description exosome complex exonuclease rrp42, putative
nr
ID XP_012080690.1
description PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
swissprot
ID Q9D0M0
description Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2 SV=2
trembl
ID A0A067KG79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13792 PE=4 SV=1
Gene Ontology
ID GO:0005737
description exosome complex component rrp42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47405: 86626-86803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_070 0.0 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
2 Hb_015001_020 0.0716472766 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_000032_570 0.079509301 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
4 Hb_001454_210 0.0851029718 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
5 Hb_002097_110 0.0860548466 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_001771_090 0.0867620869 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
7 Hb_019253_020 0.0879969878 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
8 Hb_000483_200 0.0887210331 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_006692_030 0.0899751088 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
10 Hb_000123_260 0.0900838133 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_001571_040 0.092430931 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
12 Hb_004662_030 0.09357987 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
13 Hb_006332_020 0.0940448724 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_028872_140 0.0959029435 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
15 Hb_015306_020 0.0960170718 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
16 Hb_007508_070 0.0969490195 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_001366_190 0.0981424509 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
18 Hb_005062_070 0.0981645615 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
19 Hb_004600_040 0.098926474 - - -
20 Hb_000599_110 0.0992976545 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000532_070 Hb_000532_070 Hb_015001_020 Hb_015001_020 Hb_000532_070--Hb_015001_020 Hb_000032_570 Hb_000032_570 Hb_000532_070--Hb_000032_570 Hb_001454_210 Hb_001454_210 Hb_000532_070--Hb_001454_210 Hb_002097_110 Hb_002097_110 Hb_000532_070--Hb_002097_110 Hb_001771_090 Hb_001771_090 Hb_000532_070--Hb_001771_090 Hb_019253_020 Hb_019253_020 Hb_000532_070--Hb_019253_020 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_028872_140 Hb_001454_210--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120 Hb_002097_110--Hb_004662_030 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_000103_180 Hb_000103_180 Hb_001771_090--Hb_000103_180 Hb_001771_090--Hb_000032_570 Hb_002449_020 Hb_002449_020 Hb_001771_090--Hb_002449_020 Hb_002079_010 Hb_002079_010 Hb_001771_090--Hb_002079_010 Hb_001771_090--Hb_006692_030 Hb_000483_200 Hb_000483_200 Hb_001771_090--Hb_000483_200 Hb_005357_030 Hb_005357_030 Hb_019253_020--Hb_005357_030 Hb_001138_050 Hb_001138_050 Hb_019253_020--Hb_001138_050 Hb_000656_400 Hb_000656_400 Hb_019253_020--Hb_000656_400 Hb_000251_130 Hb_000251_130 Hb_019253_020--Hb_000251_130 Hb_000613_140 Hb_000613_140 Hb_019253_020--Hb_000613_140 Hb_006332_020 Hb_006332_020 Hb_019253_020--Hb_006332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02075 0.488879 0.186593 0.465315 1.55007 1.81446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55233 1.91843 1.4374 1.10666 0.709723

CAGE analysis