Hb_000532_130

Information

Type -
Description -
Location Contig532: 158257-161309
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_333621
description hypothetical protein
nr
ID WP_016953430.1
description hypothetical protein [Anabaena sp. PCC 7108]
swissprot
ID P28342
description Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1
trembl
ID S4YAR3
description Uncharacterized protein OS=Sorangium cellulosum So0157-2 GN=SCE1572_38645 PE=3 SV=1
Gene Ontology
ID GO:0016740
description glutathione s-transferase t1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47411: 159368-161308 , PASA_asmbl_47412: 161027-161259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_130 0.0 - - hypothetical protein [Anabaena sp. PCC 7108]
2 Hb_002739_060 0.0959497278 - - -
3 Hb_007253_040 0.121147567 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
4 Hb_008175_030 0.1212071362 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
5 Hb_001408_150 0.126686025 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_002609_150 0.1285156989 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_060909_010 0.132159727 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
8 Hb_000778_020 0.1412365659 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_007259_020 0.14398426 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
10 Hb_007618_010 0.144322604 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
11 Hb_000544_020 0.1472776683 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_002475_130 0.1509001672 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
13 Hb_001921_010 0.1532712848 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000007_160 0.1570343642 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
15 Hb_002739_070 0.1598206868 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
16 Hb_057079_020 0.1634214551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_062229_010 0.1644086519 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_000984_100 0.1661959951 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_001879_050 0.1693909554 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_000233_100 0.1696163422 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_000532_130 Hb_000532_130 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_008175_030 Hb_008175_030 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_060909_010 Hb_060909_010 Hb_000532_130--Hb_060909_010 Hb_002739_060--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_002739_060--Hb_000778_020 Hb_002739_060--Hb_001408_150 Hb_005880_010 Hb_005880_010 Hb_002739_060--Hb_005880_010 Hb_002739_060--Hb_002609_150 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010 Hb_008175_030--Hb_000778_020 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_001408_150--Hb_060909_010 Hb_001408_150--Hb_000778_020 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_001148_040 Hb_001148_040 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_060909_010--Hb_008226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9667 241.22 23.5032 60.3815 10.2051 26.3694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03186 0.202847 0 103.66 42.2854

CAGE analysis