Hb_000537_080

Information

Type -
Description -
Location Contig537: 155634-157901
Sequence    

Annotation

kegg
ID rcu:RCOM_0803050
description hypothetical protein
nr
ID XP_002516572.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS53
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002486_040 0.0992207252 - - -
3 Hb_002477_140 0.101352474 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
4 Hb_009265_090 0.1121285366 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
5 Hb_001504_020 0.1126188482 - - 40S ribosomal protein S12A [Hevea brasiliensis]
6 Hb_001534_050 0.113008205 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
7 Hb_015279_010 0.11715734 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_002066_070 0.1191742061 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
9 Hb_000307_090 0.120846853 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
10 Hb_002110_120 0.1220885443 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
11 Hb_003126_080 0.1237019836 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
12 Hb_003125_200 0.1242108636 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
13 Hb_000462_130 0.1258033144 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
14 Hb_001828_060 0.1263450211 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
15 Hb_007317_150 0.1272901471 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
16 Hb_000444_080 0.1282930151 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
17 Hb_001504_110 0.1284312376 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
18 Hb_000465_460 0.1297273753 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
19 Hb_000920_180 0.1302437476 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
20 Hb_000025_620 0.1318090718 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]

Gene co-expression network

sample Hb_000537_080 Hb_000537_080 Hb_002486_040 Hb_002486_040 Hb_000537_080--Hb_002486_040 Hb_002477_140 Hb_002477_140 Hb_000537_080--Hb_002477_140 Hb_009265_090 Hb_009265_090 Hb_000537_080--Hb_009265_090 Hb_001504_020 Hb_001504_020 Hb_000537_080--Hb_001504_020 Hb_001534_050 Hb_001534_050 Hb_000537_080--Hb_001534_050 Hb_015279_010 Hb_015279_010 Hb_000537_080--Hb_015279_010 Hb_003126_080 Hb_003126_080 Hb_002486_040--Hb_003126_080 Hb_007590_050 Hb_007590_050 Hb_002486_040--Hb_007590_050 Hb_002685_170 Hb_002685_170 Hb_002486_040--Hb_002685_170 Hb_004491_010 Hb_004491_010 Hb_002486_040--Hb_004491_010 Hb_003185_080 Hb_003185_080 Hb_002486_040--Hb_003185_080 Hb_000307_090 Hb_000307_090 Hb_002477_140--Hb_000307_090 Hb_009711_020 Hb_009711_020 Hb_002477_140--Hb_009711_020 Hb_005736_060 Hb_005736_060 Hb_002477_140--Hb_005736_060 Hb_000334_210 Hb_000334_210 Hb_002477_140--Hb_000334_210 Hb_000030_290 Hb_000030_290 Hb_002477_140--Hb_000030_290 Hb_003599_040 Hb_003599_040 Hb_002477_140--Hb_003599_040 Hb_002375_090 Hb_002375_090 Hb_009265_090--Hb_002375_090 Hb_000258_350 Hb_000258_350 Hb_009265_090--Hb_000258_350 Hb_000264_090 Hb_000264_090 Hb_009265_090--Hb_000264_090 Hb_114893_030 Hb_114893_030 Hb_009265_090--Hb_114893_030 Hb_009265_090--Hb_015279_010 Hb_000917_110 Hb_000917_110 Hb_009265_090--Hb_000917_110 Hb_002112_020 Hb_002112_020 Hb_001504_020--Hb_002112_020 Hb_021419_020 Hb_021419_020 Hb_001504_020--Hb_021419_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_001504_020--Hb_010921_010 Hb_175215_010 Hb_175215_010 Hb_001504_020--Hb_175215_010 Hb_000462_130 Hb_000462_130 Hb_001534_050--Hb_000462_130 Hb_003125_200 Hb_003125_200 Hb_001534_050--Hb_003125_200 Hb_028995_040 Hb_028995_040 Hb_001534_050--Hb_028995_040 Hb_001534_050--Hb_004491_010 Hb_000771_120 Hb_000771_120 Hb_001534_050--Hb_000771_120 Hb_003078_040 Hb_003078_040 Hb_001534_050--Hb_003078_040 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173404 0.324755 0.291468 0.081227 0.318943 0.30377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.471002 0.740403 0.26073 0.242259 0.144331

CAGE analysis