Hb_000538_020

Information

Type -
Description -
Location Contig538: 32794-40367
Sequence    

Annotation

kegg
ID rcu:RCOM_1604350
description hypothetical protein
nr
ID XP_012074733.1
description PREDICTED: autophagy protein 5 [Jatropha curcas]
swissprot
ID Q9FFI2
description Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1
trembl
ID B9SKR7
description Autophagy protein 5 OS=Ricinus communis GN=RCOM_1604350 PE=3 SV=1
Gene Ontology
ID GO:0005737
description autophagy protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_020 0.0 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
2 Hb_000107_390 0.0583447397 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
3 Hb_000666_110 0.0711121096 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
4 Hb_000270_840 0.0725635306 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
5 Hb_004722_060 0.0736744795 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
6 Hb_019962_030 0.0778053519 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
7 Hb_005527_050 0.078077203 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
8 Hb_000905_190 0.0798258257 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_168918_020 0.0821155876 - - pectin acetylesterase, putative [Ricinus communis]
10 Hb_000392_270 0.0834394145 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
11 Hb_003688_100 0.0876913473 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
12 Hb_000001_020 0.090138073 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
13 Hb_011794_090 0.0917458015 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
14 Hb_012340_030 0.0917913865 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
15 Hb_000015_080 0.0925125318 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
16 Hb_143766_090 0.0926538286 - - 60S ribosomal protein L31B [Hevea brasiliensis]
17 Hb_011537_010 0.0928620899 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
18 Hb_000265_150 0.0938381787 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
19 Hb_002784_050 0.094538619 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
20 Hb_005333_040 0.0945904897 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]

Gene co-expression network

sample Hb_000538_020 Hb_000538_020 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000666_110 Hb_000666_110 Hb_000538_020--Hb_000666_110 Hb_000270_840 Hb_000270_840 Hb_000538_020--Hb_000270_840 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_000270_360 Hb_000270_360 Hb_000270_840--Hb_000270_360 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_019962_030--Hb_001504_150 Hb_003728_020 Hb_003728_020 Hb_005527_050--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4887 6.03436 9.33292 4.60529 25.9568 18.3072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8105 20.4189 13.9347 4.07731 3.26971

CAGE analysis