Hb_000538_030

Information

Type -
Description -
Location Contig538: 41013-42677
Sequence    

Annotation

kegg
ID rcu:RCOM_1604340
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002526585.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9SKR6
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_1604340 PE=3 SV=1
Gene Ontology
ID GO:0004462
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_030 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_001856_200 0.1485729935 - - Esterase PIR7B, putative [Ricinus communis]
3 Hb_000432_090 0.1527523203 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_003605_240 0.1553132661 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
5 Hb_141990_040 0.1622274362 - - Protein SCAR2, putative [Ricinus communis]
6 Hb_002849_140 0.1725573503 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
7 Hb_006909_060 0.179367333 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
8 Hb_000976_280 0.1800705072 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
9 Hb_023344_080 0.1803002358 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
10 Hb_000987_060 0.1831256249 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
11 Hb_003777_050 0.1852951337 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
12 Hb_004324_300 0.1887360865 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
13 Hb_000009_450 0.1892048435 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
14 Hb_000258_380 0.1895566268 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
15 Hb_001123_200 0.1895733589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001473_040 0.1899574464 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_001825_060 0.1918951613 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
18 Hb_003097_100 0.1921497973 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
19 Hb_000210_010 0.193655177 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
20 Hb_005048_020 0.1949188051 - - Retrotransposon protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000538_030 Hb_000538_030 Hb_001856_200 Hb_001856_200 Hb_000538_030--Hb_001856_200 Hb_000432_090 Hb_000432_090 Hb_000538_030--Hb_000432_090 Hb_003605_240 Hb_003605_240 Hb_000538_030--Hb_003605_240 Hb_141990_040 Hb_141990_040 Hb_000538_030--Hb_141990_040 Hb_002849_140 Hb_002849_140 Hb_000538_030--Hb_002849_140 Hb_006909_060 Hb_006909_060 Hb_000538_030--Hb_006909_060 Hb_002217_020 Hb_002217_020 Hb_001856_200--Hb_002217_020 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_013241_010 Hb_013241_010 Hb_000432_090--Hb_013241_010 Hb_010872_070 Hb_010872_070 Hb_000432_090--Hb_010872_070 Hb_000976_280 Hb_000976_280 Hb_000432_090--Hb_000976_280 Hb_000432_090--Hb_000987_060 Hb_000432_090--Hb_002217_020 Hb_000432_090--Hb_001856_200 Hb_002701_220 Hb_002701_220 Hb_003605_240--Hb_002701_220 Hb_003605_240--Hb_000976_280 Hb_001123_200 Hb_001123_200 Hb_003605_240--Hb_001123_200 Hb_000364_040 Hb_000364_040 Hb_003605_240--Hb_000364_040 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_141990_040--Hb_001825_060 Hb_141990_040--Hb_000009_450 Hb_012573_040 Hb_012573_040 Hb_141990_040--Hb_012573_040 Hb_000304_030 Hb_000304_030 Hb_141990_040--Hb_000304_030 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040 Hb_128524_020 Hb_128524_020 Hb_002849_140--Hb_128524_020 Hb_002849_140--Hb_001123_200 Hb_004965_050 Hb_004965_050 Hb_002849_140--Hb_004965_050 Hb_002849_140--Hb_006909_060 Hb_000394_110 Hb_000394_110 Hb_002849_140--Hb_000394_110 Hb_006909_060--Hb_000210_010 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156082 0.543725 0.260238 0.114173 0.0503816 0.0458119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119161 0.281123 0.512678 0.0756271 0.0948902

CAGE analysis