Hb_000538_100

Information

Type -
Description -
Location Contig538: 92739-109774
Sequence    

Annotation

kegg
ID rcu:RCOM_1123640
description hypothetical protein
nr
ID XP_002532792.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8H1U4
description Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana GN=APC5 PE=1 SV=1
trembl
ID B9T3H3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1123640 PE=4 SV=1
Gene Ontology
ID GO:0007276
description anaphase-promoting complex subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47646: 92843-93114 , PASA_asmbl_47647: 93126-94456 , PASA_asmbl_47648: 94602-96334 , PASA_asmbl_47649: 96497-100725 , PASA_asmbl_47650: 102639-104019 , PASA_asmbl_47651: 106236-107338 , PASA_asmbl_47652: 107971-109828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006827_020 0.0550112849 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007317_110 0.058083125 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
4 Hb_006252_040 0.058682681 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
5 Hb_103012_010 0.0601916467 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
6 Hb_002304_090 0.0617193766 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
7 Hb_003952_070 0.0618888902 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_007059_010 0.0632180976 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
9 Hb_008864_110 0.0635991212 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_001486_340 0.0648686308 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
11 Hb_000618_030 0.0658873305 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
12 Hb_006620_020 0.0669199937 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_009627_010 0.0684138261 - - Protein dom-3, putative [Ricinus communis]
14 Hb_001369_180 0.0691507568 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
15 Hb_000879_200 0.0706664989 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_005532_050 0.0712230217 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_007594_130 0.0715790924 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
18 Hb_000160_040 0.0721584289 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_000523_050 0.0728574821 - - microsomal glutathione s-transferase, putative [Ricinus communis]
20 Hb_004837_190 0.0742411 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_100 Hb_000538_100 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_006252_040--Hb_003952_070 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_001946_010 Hb_001946_010 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_009627_010 Hb_009627_010 Hb_002304_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_003952_070--Hb_004881_020 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.70753 4.42 3.87972 4.3327 9.05438 8.95433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.25373 4.45609 4.73406 4.48579 2.61209

CAGE analysis