Hb_000538_110

Information

Type -
Description -
Location Contig538: 110778-115324
Sequence    

Annotation

kegg
ID rcu:RCOM_1123530
description sucrose synthase, putative (EC:2.4.1.13)
nr
ID AGM14946.1
description sucrose synthase 1 [Hevea brasiliensis]
swissprot
ID Q9FX32
description Sucrose synthase 6 OS=Arabidopsis thaliana GN=SUS6 PE=1 SV=1
trembl
ID A0A023HK97
description Sucrose synthase 1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47653: 110541-114604 , PASA_asmbl_47654: 110541-114604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_110 0.0 - - sucrose synthase 1 [Hevea brasiliensis]
2 Hb_001097_030 0.0679383352 - - nuclear transport factor, putative [Ricinus communis]
3 Hb_011214_080 0.0732579094 - - sucrose synthase 1 [Hevea brasiliensis]
4 Hb_005062_100 0.0777215228 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
5 Hb_002119_150 0.0808625737 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
6 Hb_000029_210 0.0857246608 - - protein binding protein, putative [Ricinus communis]
7 Hb_012760_120 0.0889306059 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
8 Hb_000260_520 0.0909137273 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_002675_220 0.0939911925 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
10 Hb_000254_080 0.0971050974 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
11 Hb_008518_060 0.0972880821 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
12 Hb_000739_280 0.0973035117 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_189208_080 0.0984607547 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
14 Hb_002250_040 0.0998817109 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
15 Hb_018487_040 0.1009314991 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
16 Hb_001488_160 0.1016364546 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_003038_070 0.1065838339 - - syntaxin, putative [Ricinus communis]
18 Hb_001104_070 0.1080369327 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
19 Hb_000997_370 0.1098215004 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
20 Hb_001163_010 0.1103646947 - - PREDICTED: syncoilin [Jatropha curcas]

Gene co-expression network

sample Hb_000538_110 Hb_000538_110 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_001097_030--Hb_000029_210 Hb_001163_010 Hb_001163_010 Hb_001097_030--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_001097_030--Hb_001053_120 Hb_001097_030--Hb_005062_100 Hb_008518_060 Hb_008518_060 Hb_001097_030--Hb_008518_060 Hb_189208_080 Hb_189208_080 Hb_011214_080--Hb_189208_080 Hb_011214_080--Hb_012760_120 Hb_018487_040 Hb_018487_040 Hb_011214_080--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_011214_080--Hb_002250_040 Hb_002675_220 Hb_002675_220 Hb_011214_080--Hb_002675_220 Hb_005062_100--Hb_000029_210 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_004837_080 Hb_004837_080 Hb_002119_150--Hb_004837_080 Hb_000254_080 Hb_000254_080 Hb_002119_150--Hb_000254_080 Hb_001269_540 Hb_001269_540 Hb_002119_150--Hb_001269_540 Hb_002119_150--Hb_000260_520 Hb_080797_010 Hb_080797_010 Hb_002119_150--Hb_080797_010 Hb_000029_210--Hb_008518_060 Hb_000029_210--Hb_001163_010 Hb_000029_210--Hb_001053_120 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_012760_120--Hb_018487_040 Hb_001488_160 Hb_001488_160 Hb_012760_120--Hb_001488_160 Hb_005483_040 Hb_005483_040 Hb_012760_120--Hb_005483_040 Hb_002044_070 Hb_002044_070 Hb_012760_120--Hb_002044_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00942717 0.16318 0.897645 3.7981 0 0.00714695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0345565 0.0271923 0.0259303 0.145753 7.63316

CAGE analysis