Hb_000538_130

Information

Type -
Description -
Location Contig538: 126090-130154
Sequence    

Annotation

kegg
ID rcu:RCOM_0286430
description Phytoene synthase, chloroplast precursor, putative
nr
ID ACY42665.1
description phytoene synthase 2 [Manihot esculenta]
swissprot
ID P49293
description Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1
trembl
ID E0XGY1
description Phytoene synthase 2 OS=Manihot esculenta GN=PSY2 PE=2 SV=1
Gene Ontology
ID GO:0010287
description phytoene synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47657: 126534-127696 , PASA_asmbl_47658: 128324-128893 , PASA_asmbl_47659: 126151-130114 , PASA_asmbl_47661: 126151-128978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_130 0.0 - - phytoene synthase 2 [Manihot esculenta]
2 Hb_001301_330 0.0785366704 - - OTU-like cysteine protease family protein [Populus trichocarpa]
3 Hb_006846_160 0.1267278849 - - electron transporter, putative [Ricinus communis]
4 Hb_000123_370 0.1291977237 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_000392_450 0.1373955414 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_000749_200 0.1384950973 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
7 Hb_030545_010 0.1430533367 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
8 Hb_007263_010 0.1452207124 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_006252_030 0.1469103545 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
10 Hb_000438_130 0.149030404 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
11 Hb_001386_090 0.1495662351 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
12 Hb_006618_070 0.1531330013 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
13 Hb_001793_020 0.1539152194 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
14 Hb_000340_410 0.1559242428 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_007304_030 0.1560639508 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
16 Hb_002498_170 0.1566542622 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_000211_040 0.1589065003 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
18 Hb_000181_060 0.1606093014 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
19 Hb_004517_030 0.1608392873 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000212_250 0.1611327967 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000538_130 Hb_000538_130 Hb_001301_330 Hb_001301_330 Hb_000538_130--Hb_001301_330 Hb_006846_160 Hb_006846_160 Hb_000538_130--Hb_006846_160 Hb_000123_370 Hb_000123_370 Hb_000538_130--Hb_000123_370 Hb_000392_450 Hb_000392_450 Hb_000538_130--Hb_000392_450 Hb_000749_200 Hb_000749_200 Hb_000538_130--Hb_000749_200 Hb_030545_010 Hb_030545_010 Hb_000538_130--Hb_030545_010 Hb_001301_330--Hb_000392_450 Hb_006816_190 Hb_006816_190 Hb_001301_330--Hb_006816_190 Hb_000211_040 Hb_000211_040 Hb_001301_330--Hb_000211_040 Hb_001301_330--Hb_000749_200 Hb_007263_010 Hb_007263_010 Hb_001301_330--Hb_007263_010 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_000322_040 Hb_000322_040 Hb_006846_160--Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_006846_160--Hb_006252_030 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040 Hb_001793_020 Hb_001793_020 Hb_000123_370--Hb_001793_020 Hb_000146_030 Hb_000146_030 Hb_000123_370--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_000123_370--Hb_000000_180 Hb_000123_370--Hb_001301_330 Hb_004007_170 Hb_004007_170 Hb_000123_370--Hb_004007_170 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000749_200--Hb_000934_260 Hb_000140_440 Hb_000140_440 Hb_030545_010--Hb_000140_440 Hb_160256_010 Hb_160256_010 Hb_030545_010--Hb_160256_010 Hb_030545_010--Hb_003874_010 Hb_030545_010--Hb_007263_010 Hb_006555_040 Hb_006555_040 Hb_030545_010--Hb_006555_040 Hb_004221_030 Hb_004221_030 Hb_030545_010--Hb_004221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5475 21.5121 175.993 60.9438 37.7927 15.5153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5524 27.6207 5.07986 5.93033 82.1976

CAGE analysis