Hb_000538_160

Information

Type -
Description -
Location Contig538: 140104-157226
Sequence    

Annotation

kegg
ID vvi:100250662
description RNA-binding protein 5-B
nr
ID XP_012074701.1
description PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
swissprot
ID Q99KG3
description RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1
trembl
ID A0A067KL75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10480 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 5-b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47664: 153126-153918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_160 0.0 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
2 Hb_005271_190 0.057859731 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_006198_120 0.0624047726 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
4 Hb_000441_120 0.0727753585 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000792_010 0.0797814754 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
6 Hb_001008_120 0.0800676209 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
7 Hb_003529_170 0.0806798512 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
8 Hb_009270_020 0.0807294637 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
9 Hb_000181_320 0.082979903 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_000329_710 0.0830375106 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
11 Hb_003847_130 0.0835095775 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
12 Hb_003913_070 0.0842478209 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
13 Hb_001417_030 0.0843068363 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_000317_050 0.0879032456 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
15 Hb_007645_100 0.0884694687 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
16 Hb_017862_020 0.0887047119 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
17 Hb_001266_100 0.0888937156 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
18 Hb_002518_260 0.0897832256 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
19 Hb_001638_270 0.0903158212 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
20 Hb_000462_170 0.091335598 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000538_160 Hb_000538_160 Hb_005271_190 Hb_005271_190 Hb_000538_160--Hb_005271_190 Hb_006198_120 Hb_006198_120 Hb_000538_160--Hb_006198_120 Hb_000441_120 Hb_000441_120 Hb_000538_160--Hb_000441_120 Hb_000792_010 Hb_000792_010 Hb_000538_160--Hb_000792_010 Hb_001008_120 Hb_001008_120 Hb_000538_160--Hb_001008_120 Hb_003529_170 Hb_003529_170 Hb_000538_160--Hb_003529_170 Hb_005271_190--Hb_006198_120 Hb_005271_190--Hb_003529_170 Hb_001655_060 Hb_001655_060 Hb_005271_190--Hb_001655_060 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_001062_010 Hb_001062_010 Hb_005271_190--Hb_001062_010 Hb_009079_030 Hb_009079_030 Hb_006198_120--Hb_009079_030 Hb_006198_120--Hb_003529_170 Hb_003913_070 Hb_003913_070 Hb_006198_120--Hb_003913_070 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_002641_030 Hb_002641_030 Hb_003529_170--Hb_002641_030 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45754 6.13272 3.04784 3.01697 6.10584 5.20531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86521 6.22171 4.30451 7.73102 7.42231

CAGE analysis