Hb_000538_200

Information

Type -
Description -
Location Contig538: 207142-209226
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09280g
description POPTRDRAFT_779358; hypothetical protein
nr
ID XP_012074695.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID A0A067KHL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10473 PE=4 SV=1
Gene Ontology
ID GO:0004812
description pentatricopeptide repeat-containing protein at2g22070-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47676: 206915-207277 , PASA_asmbl_47678: 208621-208932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_200 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
2 Hb_004600_040 0.0637707694 - - -
3 Hb_001157_060 0.0673435632 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
4 Hb_000815_210 0.0689750775 - - uncoupling protein 3, partial [Manihot esculenta]
5 Hb_001736_040 0.0733950381 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_011673_030 0.0765912982 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
7 Hb_000421_260 0.0780680121 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
8 Hb_001019_060 0.0851721068 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
9 Hb_000723_260 0.0853226935 - - ethylene insensitive protein, putative [Ricinus communis]
10 Hb_002783_260 0.0860074657 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
11 Hb_002477_030 0.0865559747 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
12 Hb_001545_120 0.0870777401 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
13 Hb_002150_030 0.0871444291 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
14 Hb_000661_050 0.0872427377 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
15 Hb_001720_050 0.0874531148 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
16 Hb_002890_340 0.0880666192 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
17 Hb_003506_080 0.0902543277 - - dipeptidyl peptidase IV, putative [Ricinus communis]
18 Hb_000317_020 0.0912865437 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
19 Hb_005237_010 0.0916179858 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
20 Hb_007426_030 0.0918141721 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_200 Hb_000538_200 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_001157_060--Hb_004600_040 Hb_001157_060--Hb_003097_150 Hb_000803_150 Hb_000803_150 Hb_001157_060--Hb_000803_150 Hb_001157_060--Hb_000421_260 Hb_001157_060--Hb_000123_260 Hb_000051_070 Hb_000051_070 Hb_000815_210--Hb_000051_070 Hb_003406_010 Hb_003406_010 Hb_000815_210--Hb_003406_010 Hb_000815_210--Hb_004600_040 Hb_000815_210--Hb_011673_030 Hb_000608_030 Hb_000608_030 Hb_000815_210--Hb_000608_030 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_011673_030--Hb_003406_010 Hb_002890_340 Hb_002890_340 Hb_000421_260--Hb_002890_340 Hb_001720_050 Hb_001720_050 Hb_000421_260--Hb_001720_050 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40622 2.13349 0.777386 1.10902 4.97626 6.25432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67248 3.86647 3.95978 1.84114 2.22467

CAGE analysis