Hb_000538_210

Information

Type -
Description -
Location Contig538: 209893-220056
Sequence    

Annotation

kegg
ID rcu:RCOM_0763930
description ATP binding protein, putative
nr
ID XP_002526190.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJM1
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0763930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47679: 209663-211218 , PASA_asmbl_47680: 213642-214261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_210 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_010402_010 0.0804023824 - - BnaC06g23470D [Brassica napus]
3 Hb_000696_110 0.0824013016 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
4 Hb_000387_080 0.0878437547 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
5 Hb_010174_120 0.0914388824 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
6 Hb_000025_480 0.092566529 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
7 Hb_000029_030 0.0965788313 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
8 Hb_002357_040 0.0972581306 - - latex-abundant protein [Hevea brasiliensis]
9 Hb_000057_060 0.1017169893 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
10 Hb_010174_130 0.1030441095 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
11 Hb_001476_100 0.1035775249 - - conserved hypothetical protein [Ricinus communis]
12 Hb_162275_010 0.1041982303 - - -
13 Hb_001981_090 0.1044107595 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
14 Hb_007760_030 0.1061039384 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
15 Hb_000173_170 0.1063555476 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
16 Hb_011224_080 0.1097438204 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
17 Hb_001366_220 0.1151548343 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002659_140 0.1166054269 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
19 Hb_000599_120 0.1167272035 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
20 Hb_011174_070 0.1171733717 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]

Gene co-expression network

sample Hb_000538_210 Hb_000538_210 Hb_010402_010 Hb_010402_010 Hb_000538_210--Hb_010402_010 Hb_000696_110 Hb_000696_110 Hb_000538_210--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_000538_210--Hb_000387_080 Hb_010174_120 Hb_010174_120 Hb_000538_210--Hb_010174_120 Hb_000025_480 Hb_000025_480 Hb_000538_210--Hb_000025_480 Hb_000029_030 Hb_000029_030 Hb_000538_210--Hb_000029_030 Hb_004800_160 Hb_004800_160 Hb_010402_010--Hb_004800_160 Hb_010402_010--Hb_010174_120 Hb_000173_170 Hb_000173_170 Hb_010402_010--Hb_000173_170 Hb_002498_100 Hb_002498_100 Hb_010402_010--Hb_002498_100 Hb_010402_010--Hb_000025_480 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_120--Hb_010174_130 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_000025_480--Hb_011174_070 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0507 1.8156 2.84079 4.14227 32.9291 38.707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3918 25.8874 44.3093 10.6835 8.22945

CAGE analysis