Hb_000538_240

Information

Type -
Description -
Location Contig538: 264177-264770
Sequence    

Annotation

kegg
ID rcu:RCOM_0509420
description hypothetical protein
nr
ID XP_012083549.1
description PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47685: 263918-264882
cDNA
(Sanger)
(ID:Location)		 001_F24.ab1: 264071-264882 , 001_O08.ab1: 264126-264882 , 005_P08.ab1: 264044-264816 , 012_G23.ab1: 264093-264882 , 022_H05.ab1: 264218-264878 , 034_M22.ab1: 264100-264882 , 035_J22.ab1: 263965-264765 , 035_N01.ab1: 264040-264789 , 036_M09.ab1: 264010-264789 , 037_E01.ab1: 263963-264789 , 042_D24.ab1: 264046-264801 , 049_H01.ab1: 264137-264876

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_240 0.0 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
2 Hb_005463_050 0.1022396937 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
3 Hb_011671_480 0.1057915267 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002232_040 0.1078887881 - - -
5 Hb_002631_280 0.1106473364 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
6 Hb_001221_220 0.1126627589 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
7 Hb_001911_040 0.1133519278 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
8 Hb_000086_170 0.1181838947 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
9 Hb_005245_120 0.1209788733 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_156635_010 0.125519107 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
11 Hb_109484_010 0.1267164857 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
12 Hb_000045_300 0.1273852708 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
13 Hb_000913_040 0.1291216068 - - Methyltransferase-related protein, putative [Theobroma cacao]
14 Hb_000676_260 0.1299733662 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
15 Hb_004607_090 0.1305539155 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
16 Hb_000522_150 0.1313612474 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
17 Hb_007943_050 0.1316756871 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_006643_020 0.1318315704 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
19 Hb_003567_030 0.1324083686 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
20 Hb_000270_310 0.1332298056 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]

Gene co-expression network

sample Hb_000538_240 Hb_000538_240 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_011671_480 Hb_011671_480 Hb_000538_240--Hb_011671_480 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_001221_220 Hb_001221_220 Hb_000538_240--Hb_001221_220 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_000676_260 Hb_000676_260 Hb_005463_050--Hb_000676_260 Hb_008225_090 Hb_008225_090 Hb_005463_050--Hb_008225_090 Hb_013738_020 Hb_013738_020 Hb_005463_050--Hb_013738_020 Hb_002936_010 Hb_002936_010 Hb_005463_050--Hb_002936_010 Hb_000086_170 Hb_000086_170 Hb_005463_050--Hb_000086_170 Hb_001829_040 Hb_001829_040 Hb_011671_480--Hb_001829_040 Hb_011671_480--Hb_001911_040 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_000096_170 Hb_000096_170 Hb_002232_040--Hb_000096_170 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_124953_020 Hb_124953_020 Hb_002232_040--Hb_124953_020 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150 Hb_005784_040 Hb_005784_040 Hb_002631_280--Hb_005784_040 Hb_000003_540 Hb_000003_540 Hb_002631_280--Hb_000003_540 Hb_000384_070 Hb_000384_070 Hb_002631_280--Hb_000384_070 Hb_002631_280--Hb_011671_480 Hb_002631_280--Hb_000086_170 Hb_005867_090 Hb_005867_090 Hb_001221_220--Hb_005867_090 Hb_007943_050 Hb_007943_050 Hb_001221_220--Hb_007943_050 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.23 263.396 251.595 437.301 132.575 141.707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
158.876 390.852 104.242 158.368 84.0452

CAGE analysis