Hb_000538_250

Information

Type -
Description -
Location Contig538: 266109-277743
Sequence    

Annotation

kegg
ID rcu:RCOM_0509560
description hypothetical protein
nr
ID XP_012092908.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
swissprot
ID C0LGE0
description Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1
trembl
ID A0A067J8L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05811 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g07650

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47686: 266240-267791 , PASA_asmbl_47687: 267802-269399 , PASA_asmbl_47689: 269431-270198 , PASA_asmbl_47691: 270438-273723 , PASA_asmbl_47692: 273121-273723 , PASA_asmbl_47693: 273812-277224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_250 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
2 Hb_000212_270 0.1157021137 - - calreticulin, putative [Ricinus communis]
3 Hb_003337_020 0.1205493556 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
4 Hb_007576_130 0.1223248882 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
5 Hb_002890_160 0.1236974522 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
6 Hb_000345_400 0.1294058993 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000265_170 0.1311597823 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
8 Hb_006188_020 0.1315108584 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
9 Hb_002027_100 0.133393414 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000697_020 0.1334315934 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
11 Hb_001352_030 0.1337598306 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
12 Hb_010534_040 0.1343415681 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
13 Hb_003020_070 0.1347548377 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
14 Hb_001638_190 0.1373205153 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
15 Hb_000890_170 0.1395289268 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
16 Hb_001442_050 0.1444729786 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
17 Hb_003531_050 0.1448043401 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
18 Hb_107078_010 0.1451351633 - - -
19 Hb_006478_050 0.1456870362 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
20 Hb_001898_100 0.1464728532 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000538_250 Hb_000538_250 Hb_000212_270 Hb_000212_270 Hb_000538_250--Hb_000212_270 Hb_003337_020 Hb_003337_020 Hb_000538_250--Hb_003337_020 Hb_007576_130 Hb_007576_130 Hb_000538_250--Hb_007576_130 Hb_002890_160 Hb_002890_160 Hb_000538_250--Hb_002890_160 Hb_000345_400 Hb_000345_400 Hb_000538_250--Hb_000345_400 Hb_000265_170 Hb_000265_170 Hb_000538_250--Hb_000265_170 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_003337_020--Hb_000265_170 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_003337_020--Hb_000697_020 Hb_001544_060 Hb_001544_060 Hb_003337_020--Hb_001544_060 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_003337_020--Hb_001898_100 Hb_007120_130 Hb_007120_130 Hb_007576_130--Hb_007120_130 Hb_001638_190 Hb_001638_190 Hb_007576_130--Hb_001638_190 Hb_007576_130--Hb_001898_100 Hb_001352_030 Hb_001352_030 Hb_007576_130--Hb_001352_030 Hb_007576_130--Hb_003337_020 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_000345_400--Hb_001638_190 Hb_000294_020 Hb_000294_020 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000358_160 Hb_000358_160 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_110266_010 Hb_110266_010 Hb_000345_400--Hb_110266_010 Hb_000265_170--Hb_001352_030 Hb_000185_170 Hb_000185_170 Hb_000265_170--Hb_000185_170 Hb_000265_170--Hb_003531_050 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_001606_010 Hb_001606_010 Hb_000265_170--Hb_001606_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138173 3.97417 14.6902 3.61549 0.0495627 0.741104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0391124 0.102597 0.0393149 1.13063 8.48631

CAGE analysis