Hb_000538_260

Information

Type -
Description -
Location Contig538: 280430-286116
Sequence    

Annotation

kegg
ID cit:102627545
description serine/threonine-protein kinase HT1-like
nr
ID XP_006474351.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID V7CTI9
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G301900g PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47695: 280552-283465 , PASA_asmbl_47696: 285940-286049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_260 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
2 Hb_065525_130 0.1059105522 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_003638_010 0.1244225778 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
4 Hb_003849_040 0.1246807365 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
5 Hb_000156_160 0.1279757521 - - PREDICTED: urease accessory protein G [Jatropha curcas]
6 Hb_018202_050 0.1286567174 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
7 Hb_000985_040 0.1300711744 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
8 Hb_001105_050 0.1383832024 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
9 Hb_013016_020 0.1389395409 - - Disease resistance protein RPS2, putative [Ricinus communis]
10 Hb_002471_180 0.1430571136 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_048476_150 0.1439096543 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
12 Hb_000988_030 0.1464579549 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002890_150 0.1465298897 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
14 Hb_000347_270 0.1475287967 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
15 Hb_000085_140 0.1480258065 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
16 Hb_003992_030 0.1481863804 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
17 Hb_000175_590 0.1499749281 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
18 Hb_002092_100 0.150761852 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_012098_150 0.1527589767 - - ARC5 protein [Manihot esculenta]
20 Hb_005271_160 0.1534438029 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_260 Hb_000538_260 Hb_065525_130 Hb_065525_130 Hb_000538_260--Hb_065525_130 Hb_003638_010 Hb_003638_010 Hb_000538_260--Hb_003638_010 Hb_003849_040 Hb_003849_040 Hb_000538_260--Hb_003849_040 Hb_000156_160 Hb_000156_160 Hb_000538_260--Hb_000156_160 Hb_018202_050 Hb_018202_050 Hb_000538_260--Hb_018202_050 Hb_000985_040 Hb_000985_040 Hb_000538_260--Hb_000985_040 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_000024_120 Hb_000024_120 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160 Hb_002890_150 Hb_002890_150 Hb_003849_040--Hb_002890_150 Hb_003849_040--Hb_000156_160 Hb_000077_010 Hb_000077_010 Hb_003849_040--Hb_000077_010 Hb_003849_040--Hb_000985_040 Hb_000077_120 Hb_000077_120 Hb_003849_040--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_003849_040--Hb_044155_010 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_016734_090 Hb_016734_090 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_000156_160--Hb_011918_050 Hb_003894_040 Hb_003894_040 Hb_018202_050--Hb_003894_040 Hb_000347_270 Hb_000347_270 Hb_018202_050--Hb_000347_270 Hb_001369_350 Hb_001369_350 Hb_018202_050--Hb_001369_350 Hb_018202_050--Hb_002092_100 Hb_002902_020 Hb_002902_020 Hb_018202_050--Hb_002902_020 Hb_018202_050--Hb_011918_050 Hb_000985_040--Hb_002890_150 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000985_040--Hb_000077_120 Hb_011344_070 Hb_011344_070 Hb_000985_040--Hb_011344_070 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9586 12.4512 25.7106 8.99928 14.1398 16.9963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13819 1.89088 0.696861 5.20677 15.7073

CAGE analysis