Hb_000538_270

Information

Type -
Description -
Location Contig538: 306182-313064
Sequence    

Annotation

kegg
ID cit:102627545
description serine/threonine-protein kinase HT1-like
nr
ID XP_006474351.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID V7CTI9
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G301900g PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47698: 306212-312692 , PASA_asmbl_47699: 306212-312692 , PASA_asmbl_47700: 309540-309935 , PASA_asmbl_47701: 307731-308026 , PASA_asmbl_47702: 309013-309363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_270 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
2 Hb_007416_180 0.0523719334 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
3 Hb_000757_060 0.0553781796 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
4 Hb_002686_030 0.0576121022 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
5 Hb_000289_060 0.058763324 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
6 Hb_001005_190 0.0594524251 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
7 Hb_001157_040 0.0617215972 - - casein kinase, putative [Ricinus communis]
8 Hb_007163_120 0.0621332779 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
9 Hb_002499_040 0.0638983341 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
10 Hb_077562_050 0.0642521063 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
11 Hb_001242_060 0.0661775277 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_031527_040 0.0668920114 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
13 Hb_001248_060 0.0682066541 - - conserved hypothetical protein [Ricinus communis]
14 Hb_167498_010 0.0685671609 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
15 Hb_000016_250 0.0690328896 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
16 Hb_001838_060 0.0696365518 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
17 Hb_000010_400 0.0697220548 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
18 Hb_000866_220 0.0708455575 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
19 Hb_000096_070 0.0711896437 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_001226_040 0.0712914744 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000538_270 Hb_000538_270 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_002686_030 Hb_002686_030 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_058999_020 Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_001242_060 Hb_001242_060 Hb_000757_060--Hb_001242_060 Hb_002499_040 Hb_002499_040 Hb_000757_060--Hb_002499_040 Hb_000317_240 Hb_000317_240 Hb_000757_060--Hb_000317_240 Hb_000757_060--Hb_001248_060 Hb_000556_160 Hb_000556_160 Hb_002686_030--Hb_000556_160 Hb_002686_030--Hb_000289_060 Hb_017862_020 Hb_017862_020 Hb_002686_030--Hb_017862_020 Hb_007163_120 Hb_007163_120 Hb_002686_030--Hb_007163_120 Hb_002686_030--Hb_002499_040 Hb_004221_020 Hb_004221_020 Hb_000289_060--Hb_004221_020 Hb_000289_060--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050 Hb_011491_010 Hb_011491_010 Hb_001005_190--Hb_011491_010 Hb_009767_100 Hb_009767_100 Hb_001005_190--Hb_009767_100 Hb_001005_190--Hb_007163_120 Hb_005288_010 Hb_005288_010 Hb_001005_190--Hb_005288_010 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8266 40.5269 24.2565 20.6476 33.9431 33.0657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2063 41.9788 43.8917 31.386 20.4688

CAGE analysis