Hb_000538_290

Information

Type -
Description -
Location Contig538: 329642-331953
Sequence    

Annotation

kegg
ID rcu:RCOM_0303940
description hypothetical protein
nr
ID XP_002530557.1
description hypothetical protein RCOM_0303940 [Ricinus communis]
swissprot
ID Q5XVH5
description Uncharacterized protein At1g65710 OS=Arabidopsis thaliana GN=At1g65710 PE=2 SV=1
trembl
ID B9SX38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0303940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47707: 330911-331465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_290 0.0 - - hypothetical protein RCOM_0303940 [Ricinus communis]
2 Hb_002686_320 0.0677695014 - - syntaxin, putative [Ricinus communis]
3 Hb_009113_020 0.0733840141 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
4 Hb_006810_040 0.08666794 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_000701_020 0.0892596932 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
6 Hb_000977_190 0.0915372245 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000187_050 0.09224411 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
8 Hb_005398_050 0.0932839512 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
9 Hb_001348_100 0.0951340645 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
10 Hb_001971_040 0.095794284 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
11 Hb_001950_090 0.0981801318 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
12 Hb_002836_110 0.0984909277 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
13 Hb_000345_450 0.0998230152 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
14 Hb_002203_010 0.1039803282 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
15 Hb_000480_060 0.103985807 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_005332_030 0.1040784936 - - conserved hypothetical protein [Ricinus communis]
17 Hb_159809_040 0.1049540943 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006588_100 0.1057781357 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000522_160 0.1060854901 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_006198_100 0.1067501258 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_290 Hb_000538_290 Hb_002686_320 Hb_002686_320 Hb_000538_290--Hb_002686_320 Hb_009113_020 Hb_009113_020 Hb_000538_290--Hb_009113_020 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000701_020 Hb_000701_020 Hb_000538_290--Hb_000701_020 Hb_000977_190 Hb_000977_190 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000977_190 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_001971_040 Hb_001971_040 Hb_006810_040--Hb_001971_040 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_000345_450 Hb_000345_450 Hb_000701_020--Hb_000345_450 Hb_000701_020--Hb_006588_100 Hb_000701_020--Hb_000977_190 Hb_000671_020 Hb_000671_020 Hb_000701_020--Hb_000671_020 Hb_000977_190--Hb_005332_030 Hb_000977_190--Hb_159809_040 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_000187_050--Hb_159809_040 Hb_000187_050--Hb_002686_320 Hb_011501_010 Hb_011501_010 Hb_000187_050--Hb_011501_010 Hb_000187_050--Hb_000977_190 Hb_000187_050--Hb_009113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0673049 2.50709 2.20473 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0158503 0 0.277206 0.30234

CAGE analysis