Hb_000539_040

Information

Type -
Description -
Location Contig539: 73687-76330
Sequence    

Annotation

kegg
ID rcu:RCOM_1714560
description catalytic, putative
nr
ID XP_012074672.1
description PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SJU8
description Catalytic, putative OS=Ricinus communis GN=RCOM_1714560 PE=4 SV=1
Gene Ontology
ID GO:0016787
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47735: 72945-76036 , PASA_asmbl_47736: 72945-75766 , PASA_asmbl_47737: 72945-75991 , PASA_asmbl_47738: 72945-75766 , PASA_asmbl_47739: 75892-76256
cDNA
(Sanger)
(ID:Location)		 003_D09.ab1: 74463-76032 , 004_G15.ab1: 73537-73728 , 004_L20.ab1: 74455-76036 , 005_E17.ab1: 73537-73728 , 017_H18.ab1: 74329-75991 , 020_G04.ab1: 74438-76036 , 042_M22.ab1: 74446-76032 , 043_A06.ab1: 73537-73728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000539_040 0.0 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
2 Hb_000327_260 0.0708575214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000116_220 0.1080927631 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009838_070 0.1182537729 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
5 Hb_000711_030 0.120367645 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
6 Hb_000832_270 0.1218597464 - - conserved hypothetical protein [Ricinus communis]
7 Hb_137222_010 0.1287016561 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
8 Hb_000190_230 0.1305537348 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
9 Hb_004096_210 0.1333337616 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
10 Hb_004650_050 0.1338710764 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
11 Hb_001231_010 0.1376921423 - - calcium-binding family protein [Populus trichocarpa]
12 Hb_002495_090 0.1378204302 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
13 Hb_000134_040 0.1379074704 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
14 Hb_000020_090 0.1381785786 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
15 Hb_009393_130 0.1395801165 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
16 Hb_019654_180 0.1402390209 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
17 Hb_003680_060 0.1418415708 - - hypothetical protein VITISV_022322 [Vitis vinifera]
18 Hb_003581_230 0.1424734639 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
19 Hb_000950_020 0.1443337332 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
20 Hb_000976_400 0.145147125 - - synaptotagmin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000539_040 Hb_000539_040 Hb_000327_260 Hb_000327_260 Hb_000539_040--Hb_000327_260 Hb_000116_220 Hb_000116_220 Hb_000539_040--Hb_000116_220 Hb_009838_070 Hb_009838_070 Hb_000539_040--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_000539_040--Hb_000711_030 Hb_000832_270 Hb_000832_270 Hb_000539_040--Hb_000832_270 Hb_137222_010 Hb_137222_010 Hb_000539_040--Hb_137222_010 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_000327_260--Hb_000116_220 Hb_004096_210 Hb_004096_210 Hb_000327_260--Hb_004096_210 Hb_000327_260--Hb_000832_270 Hb_003680_060 Hb_003680_060 Hb_000116_220--Hb_003680_060 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_000711_030 Hb_009838_070--Hb_004096_210 Hb_000711_030--Hb_004650_050 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110 Hb_001231_010 Hb_001231_010 Hb_000832_270--Hb_001231_010 Hb_000511_030 Hb_000511_030 Hb_000832_270--Hb_000511_030 Hb_000163_190 Hb_000163_190 Hb_000832_270--Hb_000163_190 Hb_000832_270--Hb_000116_220 Hb_000832_270--Hb_137222_010 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.828931 5.95563 86.6277 48.256 1.87803 6.06838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.925589 0.242717 4.44437 4.58038 90.2332

CAGE analysis