Hb_000539_080

Information

Type -
Description -
Location Contig539: 119847-129539
Sequence    

Annotation

kegg
ID pop:POPTR_0039s00260g
description hypothetical protein
nr
ID XP_006389171.1
description hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID U7DYJ4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0039s00260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000539_080 0.0 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
2 Hb_076895_020 0.0457023833 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
3 Hb_000081_020 0.0594720927 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
4 Hb_000948_070 0.0696034956 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
5 Hb_002110_270 0.0712817344 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
6 Hb_006006_070 0.0783400951 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_027141_010 0.0815241519 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_000140_260 0.083807186 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
9 Hb_005064_040 0.0843667838 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
10 Hb_000984_080 0.0883410492 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
11 Hb_000758_030 0.0930277164 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
12 Hb_031340_030 0.0952770898 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
13 Hb_000238_060 0.1000473679 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_004200_040 0.1040620807 - - laccase, putative [Ricinus communis]
15 Hb_002900_070 0.1051648986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000497_120 0.1063507383 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002232_400 0.107742731 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
18 Hb_000441_170 0.1106632459 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
19 Hb_000567_310 0.1110164974 - - Miraculin precursor, putative [Ricinus communis]
20 Hb_005228_170 0.1113142353 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_000539_080 Hb_000539_080 Hb_076895_020 Hb_076895_020 Hb_000539_080--Hb_076895_020 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_002110_270 Hb_002110_270 Hb_000539_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_000539_080--Hb_006006_070 Hb_027141_010 Hb_027141_010 Hb_000539_080--Hb_027141_010 Hb_076895_020--Hb_002110_270 Hb_076895_020--Hb_006006_070 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030 Hb_005064_040 Hb_005064_040 Hb_000081_020--Hb_005064_040 Hb_000081_020--Hb_076895_020 Hb_031340_030 Hb_031340_030 Hb_000081_020--Hb_031340_030 Hb_000238_060 Hb_000238_060 Hb_000081_020--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_000081_020--Hb_005228_170 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_164162_020 Hb_164162_020 Hb_000948_070--Hb_164162_020 Hb_002900_070 Hb_002900_070 Hb_000948_070--Hb_002900_070 Hb_006538_050 Hb_006538_050 Hb_000948_070--Hb_006538_050 Hb_000948_070--Hb_076895_020 Hb_002110_270--Hb_006006_070 Hb_002110_270--Hb_000758_030 Hb_002110_270--Hb_000984_080 Hb_002110_270--Hb_002900_070 Hb_006006_070--Hb_000758_030 Hb_002232_400 Hb_002232_400 Hb_006006_070--Hb_002232_400 Hb_000441_170 Hb_000441_170 Hb_006006_070--Hb_000441_170 Hb_000140_260 Hb_000140_260 Hb_027141_010--Hb_000140_260 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_027141_010--Hb_000205_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.664122 0.0870976 0.500165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.27032 0.0819212

CAGE analysis