Hb_000540_080

Information

Type -
Description -
Location Contig540: 86219-88761
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41170g
description hypothetical protein
nr
ID XP_012064932.1
description PREDICTED: laccase-17 [Jatropha curcas]
swissprot
ID Q9FJD5
description Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1
trembl
ID A0A067L6R3
description Laccase OS=Jatropha curcas GN=JCGZ_05618 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47797: 86311-86908 , PASA_asmbl_47799: 86923-87555 , PASA_asmbl_47800: 87625-88749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_080 0.0 - - PREDICTED: laccase-17 [Jatropha curcas]
2 Hb_045260_010 0.0474884837 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
3 Hb_000363_070 0.0481010904 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005228_050 0.0515688446 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
5 Hb_000724_040 0.054406674 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
6 Hb_011362_010 0.0570240226 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
7 Hb_000160_120 0.0615011291 - - conserved hypothetical protein [Ricinus communis]
8 Hb_096907_010 0.0626280019 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_000115_030 0.0630739732 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
10 Hb_002973_060 0.0645827376 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000268_050 0.0651876078 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
12 Hb_001437_170 0.0676312116 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
13 Hb_002250_040 0.0681686187 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
14 Hb_133076_010 0.0705973609 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
15 Hb_099263_010 0.07176452 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
16 Hb_011108_010 0.0725629527 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
17 Hb_003786_030 0.0770022526 - - BnaUnng00830D [Brassica napus]
18 Hb_002010_040 0.0782408715 - - -
19 Hb_002329_050 0.0794920351 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000007_290 0.0799232472 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]

Gene co-expression network

sample Hb_000540_080 Hb_000540_080 Hb_045260_010 Hb_045260_010 Hb_000540_080--Hb_045260_010 Hb_000363_070 Hb_000363_070 Hb_000540_080--Hb_000363_070 Hb_005228_050 Hb_005228_050 Hb_000540_080--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_000540_080--Hb_000724_040 Hb_011362_010 Hb_011362_010 Hb_000540_080--Hb_011362_010 Hb_000160_120 Hb_000160_120 Hb_000540_080--Hb_000160_120 Hb_045260_010--Hb_000363_070 Hb_003647_070 Hb_003647_070 Hb_045260_010--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_045260_010--Hb_002010_040 Hb_000007_290 Hb_000007_290 Hb_045260_010--Hb_000007_290 Hb_099263_010 Hb_099263_010 Hb_045260_010--Hb_099263_010 Hb_000363_070--Hb_003647_070 Hb_000363_070--Hb_002010_040 Hb_000140_040 Hb_000140_040 Hb_000363_070--Hb_000140_040 Hb_000363_070--Hb_000007_290 Hb_005228_050--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_005228_050--Hb_003786_030 Hb_002973_060 Hb_002973_060 Hb_005228_050--Hb_002973_060 Hb_011108_010 Hb_011108_010 Hb_005228_050--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_005228_050--Hb_135887_010 Hb_000724_040--Hb_002973_060 Hb_000724_040--Hb_003786_030 Hb_000724_040--Hb_011108_010 Hb_000724_040--Hb_135887_010 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_000268_050 Hb_000268_050 Hb_011362_010--Hb_000268_050 Hb_002329_050 Hb_002329_050 Hb_011362_010--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_011362_010--Hb_000883_080 Hb_011362_010--Hb_000160_120 Hb_096907_010 Hb_096907_010 Hb_011362_010--Hb_096907_010 Hb_001437_170 Hb_001437_170 Hb_000160_120--Hb_001437_170 Hb_000160_120--Hb_096907_010 Hb_003528_100 Hb_003528_100 Hb_000160_120--Hb_003528_100 Hb_000160_120--Hb_000115_030 Hb_065774_010 Hb_065774_010 Hb_000160_120--Hb_065774_010 Hb_002391_340 Hb_002391_340 Hb_000160_120--Hb_002391_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0868632 10.0701 27.1165 0.0189375 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100765 65.2601

CAGE analysis