Hb_000540_090

Information

Type -
Description -
Location Contig540: 91321-92226
Sequence    

Annotation

kegg
ID rcu:RCOM_1440410
description Chitinase 1 precursor, putative (EC:3.2.1.14)
nr
ID XP_012073007.1
description PREDICTED: chitinase 2-like [Jatropha curcas]
swissprot
ID Q7M443
description Chitinase 2 OS=Tulipa bakeri PE=1 SV=1
trembl
ID A0A067KMJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06791 PE=3 SV=1
Gene Ontology
ID GO:0004568
description chitinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_090 0.0 - - PREDICTED: chitinase 2-like [Jatropha curcas]
2 Hb_002119_030 0.1475352122 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
3 Hb_171974_010 0.1498861157 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_067028_010 0.1632126317 - - BnaC03g72040D [Brassica napus]
5 Hb_001922_100 0.1821959619 - - S-type anion channel SLAH2 [Triticum urartu]
6 Hb_003938_030 0.1897180425 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
7 Hb_000025_490 0.1922539305 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_000375_230 0.1945121091 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_000302_150 0.1965969589 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
10 Hb_001405_250 0.1984126808 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
11 Hb_104641_010 0.2120532945 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_105226_010 0.2185198727 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
13 Hb_074672_010 0.2241738223 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_167186_010 0.2252000985 - - cation-transporting atpase plant, putative [Ricinus communis]
15 Hb_158111_010 0.2280788985 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
16 Hb_001846_030 0.2297794391 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
17 Hb_011622_010 0.2307748351 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
18 Hb_001361_010 0.2331086574 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_032071_010 0.2332153905 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
20 Hb_000433_050 0.2332848666 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000540_090 Hb_000540_090 Hb_002119_030 Hb_002119_030 Hb_000540_090--Hb_002119_030 Hb_171974_010 Hb_171974_010 Hb_000540_090--Hb_171974_010 Hb_067028_010 Hb_067028_010 Hb_000540_090--Hb_067028_010 Hb_001922_100 Hb_001922_100 Hb_000540_090--Hb_001922_100 Hb_003938_030 Hb_003938_030 Hb_000540_090--Hb_003938_030 Hb_000025_490 Hb_000025_490 Hb_000540_090--Hb_000025_490 Hb_002119_030--Hb_000025_490 Hb_002119_030--Hb_067028_010 Hb_167186_010 Hb_167186_010 Hb_002119_030--Hb_167186_010 Hb_008725_220 Hb_008725_220 Hb_002119_030--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_002119_030--Hb_000959_240 Hb_005054_330 Hb_005054_330 Hb_002119_030--Hb_005054_330 Hb_171974_010--Hb_002119_030 Hb_171974_010--Hb_067028_010 Hb_003119_030 Hb_003119_030 Hb_171974_010--Hb_003119_030 Hb_001405_250 Hb_001405_250 Hb_171974_010--Hb_001405_250 Hb_171974_010--Hb_000025_490 Hb_000302_150 Hb_000302_150 Hb_067028_010--Hb_000302_150 Hb_067028_010--Hb_001922_100 Hb_006395_020 Hb_006395_020 Hb_067028_010--Hb_006395_020 Hb_067028_010--Hb_167186_010 Hb_067028_010--Hb_001405_250 Hb_001922_100--Hb_000302_150 Hb_018043_010 Hb_018043_010 Hb_001922_100--Hb_018043_010 Hb_001922_100--Hb_006395_020 Hb_158111_010 Hb_158111_010 Hb_001922_100--Hb_158111_010 Hb_001922_100--Hb_002119_030 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_083822_010 Hb_083822_010 Hb_003938_030--Hb_083822_010 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_000375_230 Hb_000375_230 Hb_003938_030--Hb_000375_230 Hb_000025_490--Hb_008725_220 Hb_000025_490--Hb_000959_240 Hb_001515_040 Hb_001515_040 Hb_000025_490--Hb_001515_040 Hb_000025_490--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000025_490--Hb_101437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276335 0.24954 0.0221888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0451369 0 0.0181986 0

CAGE analysis