Hb_000540_100

Information

Type -
Description -
Location Contig540: 92518-96048
Sequence    

Annotation

kegg
ID rcu:RCOM_1440560
description protein binding protein, putative
nr
ID XP_012064931.1
description PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
swissprot
ID Q9LVG9
description BTB/POZ domain-containing protein At5g60050 OS=Arabidopsis thaliana GN=At5g60050 PE=2 SV=1
trembl
ID A0A067LIS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05616 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47802: 93133-93951 , PASA_asmbl_47803: 94004-95374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_100 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
2 Hb_001366_270 0.0981577121 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
3 Hb_004030_060 0.1025385055 - - receptor protein kinase zmpk1, putative [Ricinus communis]
4 Hb_002311_130 0.103240285 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
5 Hb_001702_050 0.1039611222 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
6 Hb_001235_130 0.1070723328 - - -
7 Hb_001811_170 0.1087459214 - - dynamin, putative [Ricinus communis]
8 Hb_004884_090 0.111010212 - - importin beta-1, putative [Ricinus communis]
9 Hb_011174_080 0.1142086152 - - PREDICTED: sulfite oxidase [Jatropha curcas]
10 Hb_000809_250 0.1146338249 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
11 Hb_003680_020 0.1158158916 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_132082_010 0.1185337515 - - hypothetical protein VITISV_030895 [Vitis vinifera]
13 Hb_006469_070 0.1209684507 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
14 Hb_001900_100 0.1216645605 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
15 Hb_005000_090 0.1217442579 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000683_050 0.1217498027 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
17 Hb_002235_310 0.1225176571 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
18 Hb_005854_040 0.1226720113 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003581_130 0.1232980435 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_002025_030 0.1233045998 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_100 Hb_000540_100 Hb_001366_270 Hb_001366_270 Hb_000540_100--Hb_001366_270 Hb_004030_060 Hb_004030_060 Hb_000540_100--Hb_004030_060 Hb_002311_130 Hb_002311_130 Hb_000540_100--Hb_002311_130 Hb_001702_050 Hb_001702_050 Hb_000540_100--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000540_100--Hb_001235_130 Hb_001811_170 Hb_001811_170 Hb_000540_100--Hb_001811_170 Hb_005000_090 Hb_005000_090 Hb_001366_270--Hb_005000_090 Hb_005181_050 Hb_005181_050 Hb_001366_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_001366_270--Hb_000809_250 Hb_001341_010 Hb_001341_010 Hb_001366_270--Hb_001341_010 Hb_001511_180 Hb_001511_180 Hb_001366_270--Hb_001511_180 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_000683_050 Hb_000683_050 Hb_004030_060--Hb_000683_050 Hb_000494_030 Hb_000494_030 Hb_004030_060--Hb_000494_030 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_010390_010 Hb_010390_010 Hb_004030_060--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_002805_090 Hb_002805_090 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_002311_130--Hb_005000_090 Hb_001702_050--Hb_001998_220 Hb_029879_120 Hb_029879_120 Hb_001702_050--Hb_029879_120 Hb_000985_050 Hb_000985_050 Hb_001702_050--Hb_000985_050 Hb_001702_050--Hb_005000_090 Hb_021977_010 Hb_021977_010 Hb_001702_050--Hb_021977_010 Hb_003125_180 Hb_003125_180 Hb_001702_050--Hb_003125_180 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_000256_160 Hb_000256_160 Hb_001235_130--Hb_000256_160 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_001235_130--Hb_009535_030 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71649 5.70248 3.62348 8.05609 0.622225 2.89397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06489 1.44955 1.63526 6.21142 7.15636

CAGE analysis