Hb_000540_110

Information

Type -
Description -
Location Contig540: 99208-108811
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000777mg
description hypothetical protein
nr
ID XP_007208378.1
description hypothetical protein PRUPE_ppa000777mg [Prunus persica]
swissprot
ID O48963
description Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1
trembl
ID M5W762
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000777mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description phototropin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47806: 101875-104359 , PASA_asmbl_47807: 104360-108784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_110 0.0 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
2 Hb_003506_070 0.1062729892 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
3 Hb_125126_010 0.1078400128 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
4 Hb_000130_280 0.1215640523 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_001525_010 0.1218553547 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
6 Hb_014834_060 0.1309050407 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
7 Hb_010712_040 0.136347242 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
8 Hb_002485_040 0.1373899873 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
9 Hb_000123_350 0.1405561556 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_004371_010 0.1408130144 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
11 Hb_003125_030 0.1424351255 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_000347_120 0.1432082295 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
13 Hb_011161_020 0.1436438571 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
14 Hb_116086_010 0.1437919446 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_012082_010 0.1439711417 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
16 Hb_000574_420 0.1441726381 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_004899_040 0.1453139257 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
18 Hb_006738_050 0.145495184 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
19 Hb_002282_060 0.1462756009 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
20 Hb_000661_130 0.1472388422 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_110 Hb_000540_110 Hb_003506_070 Hb_003506_070 Hb_000540_110--Hb_003506_070 Hb_125126_010 Hb_125126_010 Hb_000540_110--Hb_125126_010 Hb_000130_280 Hb_000130_280 Hb_000540_110--Hb_000130_280 Hb_001525_010 Hb_001525_010 Hb_000540_110--Hb_001525_010 Hb_014834_060 Hb_014834_060 Hb_000540_110--Hb_014834_060 Hb_010712_040 Hb_010712_040 Hb_000540_110--Hb_010712_040 Hb_000465_080 Hb_000465_080 Hb_003506_070--Hb_000465_080 Hb_003125_030 Hb_003125_030 Hb_003506_070--Hb_003125_030 Hb_003506_070--Hb_001525_010 Hb_011909_060 Hb_011909_060 Hb_003506_070--Hb_011909_060 Hb_004218_090 Hb_004218_090 Hb_003506_070--Hb_004218_090 Hb_125126_010--Hb_000130_280 Hb_006738_050 Hb_006738_050 Hb_125126_010--Hb_006738_050 Hb_004310_040 Hb_004310_040 Hb_125126_010--Hb_004310_040 Hb_011249_060 Hb_011249_060 Hb_125126_010--Hb_011249_060 Hb_005188_040 Hb_005188_040 Hb_125126_010--Hb_005188_040 Hb_000123_350 Hb_000123_350 Hb_125126_010--Hb_000123_350 Hb_004899_040 Hb_004899_040 Hb_000130_280--Hb_004899_040 Hb_012082_010 Hb_012082_010 Hb_000130_280--Hb_012082_010 Hb_011161_020 Hb_011161_020 Hb_000130_280--Hb_011161_020 Hb_000130_280--Hb_011249_060 Hb_009302_030 Hb_009302_030 Hb_000130_280--Hb_009302_030 Hb_028207_040 Hb_028207_040 Hb_001525_010--Hb_028207_040 Hb_001525_010--Hb_003125_030 Hb_000953_050 Hb_000953_050 Hb_001525_010--Hb_000953_050 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010 Hb_000896_060 Hb_000896_060 Hb_014834_060--Hb_000896_060 Hb_014834_060--Hb_005188_040 Hb_024185_010 Hb_024185_010 Hb_014834_060--Hb_024185_010 Hb_000526_060 Hb_000526_060 Hb_014834_060--Hb_000526_060 Hb_000703_130 Hb_000703_130 Hb_014834_060--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_014834_060--Hb_000836_020 Hb_000661_130 Hb_000661_130 Hb_010712_040--Hb_000661_130 Hb_000265_090 Hb_000265_090 Hb_010712_040--Hb_000265_090 Hb_011242_060 Hb_011242_060 Hb_010712_040--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_010712_040--Hb_006117_080 Hb_010712_040--Hb_000703_130 Hb_010712_040--Hb_000836_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5604 65.6893 18.9597 13.4366 7.51073 27.8438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3413 7.77792 11.5768 12.5944 20.093

CAGE analysis