Hb_000540_130

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig540: 134743-150500
Sequence    

Annotation

kegg
ID rcu:RCOM_1441020
description sensory transduction histidine kinase, putative
nr
ID XP_002531836.1
description sensory transduction histidine kinase, putative [Ricinus communis]
swissprot
ID Q10N34
description Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1
trembl
ID B9T0R7
description Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_1441020 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like prr37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47813: 134787-150386 , PASA_asmbl_47814: 136341-136798 , PASA_asmbl_47815: 148484-150457 , PASA_asmbl_47816: 148288-150420 , PASA_asmbl_47817: 146206-150386 , PASA_asmbl_47819: 135979-137124 , PASA_asmbl_47820: 135976-137256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_130 0.0 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
2 Hb_001089_060 0.1235030923 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
3 Hb_000816_100 0.1522761944 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_006111_070 0.1527380583 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
5 Hb_004398_030 0.1545049858 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
6 Hb_001916_100 0.1621704796 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
7 Hb_002328_040 0.1621755518 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
8 Hb_009486_040 0.1621908547 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001498_010 0.1626342323 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
10 Hb_003952_060 0.1652813535 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
11 Hb_002053_110 0.1654225391 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003607_070 0.1671173109 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
13 Hb_001259_020 0.1673037118 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
14 Hb_000300_120 0.1677284285 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_002027_090 0.1685512339 - - -
16 Hb_002081_010 0.1687610761 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015884_030 0.1693188911 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
18 Hb_048141_020 0.1695703823 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
19 Hb_000041_090 0.1719403 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
20 Hb_000033_110 0.1744067686 - - hypothetical protein JCGZ_19253 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_130 Hb_000540_130 Hb_001089_060 Hb_001089_060 Hb_000540_130--Hb_001089_060 Hb_000816_100 Hb_000816_100 Hb_000540_130--Hb_000816_100 Hb_006111_070 Hb_006111_070 Hb_000540_130--Hb_006111_070 Hb_004398_030 Hb_004398_030 Hb_000540_130--Hb_004398_030 Hb_001916_100 Hb_001916_100 Hb_000540_130--Hb_001916_100 Hb_002328_040 Hb_002328_040 Hb_000540_130--Hb_002328_040 Hb_001089_060--Hb_000816_100 Hb_000016_130 Hb_000016_130 Hb_001089_060--Hb_000016_130 Hb_000300_120 Hb_000300_120 Hb_001089_060--Hb_000300_120 Hb_000033_110 Hb_000033_110 Hb_001089_060--Hb_000033_110 Hb_001498_010 Hb_001498_010 Hb_001089_060--Hb_001498_010 Hb_001259_020 Hb_001259_020 Hb_001089_060--Hb_001259_020 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060 Hb_015884_030 Hb_015884_030 Hb_006111_070--Hb_015884_030 Hb_000463_140 Hb_000463_140 Hb_006111_070--Hb_000463_140 Hb_000062_150 Hb_000062_150 Hb_006111_070--Hb_000062_150 Hb_024570_010 Hb_024570_010 Hb_006111_070--Hb_024570_010 Hb_012799_030 Hb_012799_030 Hb_006111_070--Hb_012799_030 Hb_000313_060 Hb_000313_060 Hb_006111_070--Hb_000313_060 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_003900_030 Hb_003900_030 Hb_001916_100--Hb_003900_030 Hb_000358_140 Hb_000358_140 Hb_001916_100--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_001916_100--Hb_010812_050 Hb_002027_090 Hb_002027_090 Hb_001916_100--Hb_002027_090 Hb_005883_020 Hb_005883_020 Hb_001916_100--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_001916_100--Hb_002233_130 Hb_012053_090 Hb_012053_090 Hb_002328_040--Hb_012053_090 Hb_002328_040--Hb_002233_130 Hb_002600_060 Hb_002600_060 Hb_002328_040--Hb_002600_060 Hb_026053_040 Hb_026053_040 Hb_002328_040--Hb_026053_040 Hb_002328_040--Hb_000033_110 Hb_000331_560 Hb_000331_560 Hb_002328_040--Hb_000331_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7305 17.4342 18.691 7.56602 28.5945 27.7731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.78096 4.5893 29.8561 6.00524 49.4989

CAGE analysis