Hb_000540_150

Information

Type -
Description -
Location Contig540: 163072-168150
Sequence    

Annotation

kegg
ID rcu:RCOM_0327500
description hydrolase, putative
nr
ID XP_012064922.1
description PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
swissprot
ID P36151
description Uncharacterized protein YKR070W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKR070W PE=1 SV=1
trembl
ID B9SW67
description Hydrolase, putative OS=Ricinus communis GN=RCOM_0327500 PE=4 SV=1
Gene Ontology
ID GO:0005739
description hydrolase family protein had-superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47825: 164107-165994 , PASA_asmbl_47826: 166041-167981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_150 0.0 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
2 Hb_007380_080 0.0754812901 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
3 Hb_000866_470 0.0944156115 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
4 Hb_000358_250 0.0983263069 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
5 Hb_001863_260 0.1012796027 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_002942_080 0.1012838887 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
7 Hb_000429_200 0.1060349683 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
8 Hb_000913_050 0.1070189986 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
9 Hb_000982_160 0.1076137108 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
10 Hb_000364_060 0.1079848725 - - JHL03K20.4 [Jatropha curcas]
11 Hb_007668_040 0.1082388754 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
12 Hb_004195_280 0.1086328629 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_001014_010 0.1092945664 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
14 Hb_002273_130 0.1094909518 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
15 Hb_091384_010 0.1121779022 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
16 Hb_030131_040 0.1123074626 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
17 Hb_008595_010 0.1125826453 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
18 Hb_005892_030 0.1138144109 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
19 Hb_007643_050 0.1143920871 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_031939_010 0.1151223047 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000540_150 Hb_000540_150 Hb_007380_080 Hb_007380_080 Hb_000540_150--Hb_007380_080 Hb_000866_470 Hb_000866_470 Hb_000540_150--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_000540_150--Hb_000358_250 Hb_001863_260 Hb_001863_260 Hb_000540_150--Hb_001863_260 Hb_002942_080 Hb_002942_080 Hb_000540_150--Hb_002942_080 Hb_000429_200 Hb_000429_200 Hb_000540_150--Hb_000429_200 Hb_007380_080--Hb_000429_200 Hb_007380_080--Hb_002942_080 Hb_025557_020 Hb_025557_020 Hb_007380_080--Hb_025557_020 Hb_004195_280 Hb_004195_280 Hb_007380_080--Hb_004195_280 Hb_000116_170 Hb_000116_170 Hb_007380_080--Hb_000116_170 Hb_000116_180 Hb_000116_180 Hb_000866_470--Hb_000116_180 Hb_003849_250 Hb_003849_250 Hb_000866_470--Hb_003849_250 Hb_000913_050 Hb_000913_050 Hb_000866_470--Hb_000913_050 Hb_030131_040 Hb_030131_040 Hb_000866_470--Hb_030131_040 Hb_000085_150 Hb_000085_150 Hb_000866_470--Hb_000085_150 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000358_250--Hb_000429_200 Hb_000358_250--Hb_003849_250 Hb_134364_010 Hb_134364_010 Hb_001863_260--Hb_134364_010 Hb_006824_060 Hb_006824_060 Hb_001863_260--Hb_006824_060 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_007262_020 Hb_007262_020 Hb_001863_260--Hb_007262_020 Hb_001085_250 Hb_001085_250 Hb_001863_260--Hb_001085_250 Hb_008253_010 Hb_008253_010 Hb_001863_260--Hb_008253_010 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_024990_010 Hb_024990_010 Hb_002942_080--Hb_024990_010 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72288 3.75001 6.07924 2.91432 14.6676 14.2994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76474 4.77621 2.75895 3.53965 4.9639

CAGE analysis