Hb_000540_180

Information

Type -
Description -
Location Contig540: 211516-214051
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13780g
description POPTRDRAFT_826047; hypothetical protein
nr
ID XP_012085845.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID B9HAX9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07360g PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_180 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_025628_010 0.0004133987 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
3 Hb_006663_080 0.0276073157 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_020154_010 0.0326560206 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_003625_030 0.0458246918 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
6 Hb_004683_030 0.04656147 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
7 Hb_000629_090 0.0482051384 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
8 Hb_039164_010 0.0485261243 - - -
9 Hb_041711_040 0.048826651 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_152483_010 0.05019007 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
11 Hb_000710_100 0.0732740267 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
12 Hb_010623_010 0.074466718 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
13 Hb_000311_130 0.0781554028 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_002395_040 0.0815427204 - - unknown [Populus trichocarpa]
15 Hb_000907_010 0.0994326714 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
16 Hb_002260_210 0.1096639249 - - unnamed protein product [Vitis vinifera]
17 Hb_000108_030 0.1096919779 - - -
18 Hb_000710_110 0.118189816 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
19 Hb_006221_020 0.1236122527 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_000373_140 0.1320970275 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]

Gene co-expression network

sample Hb_000540_180 Hb_000540_180 Hb_025628_010 Hb_025628_010 Hb_000540_180--Hb_025628_010 Hb_006663_080 Hb_006663_080 Hb_000540_180--Hb_006663_080 Hb_020154_010 Hb_020154_010 Hb_000540_180--Hb_020154_010 Hb_003625_030 Hb_003625_030 Hb_000540_180--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_000540_180--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_000540_180--Hb_000629_090 Hb_025628_010--Hb_006663_080 Hb_025628_010--Hb_020154_010 Hb_025628_010--Hb_003625_030 Hb_025628_010--Hb_004683_030 Hb_025628_010--Hb_000629_090 Hb_006663_080--Hb_003625_030 Hb_006663_080--Hb_004683_030 Hb_006663_080--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_006663_080--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_006663_080--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_006663_080--Hb_152483_010 Hb_020154_010--Hb_006663_080 Hb_002395_040 Hb_002395_040 Hb_020154_010--Hb_002395_040 Hb_000907_010 Hb_000907_010 Hb_020154_010--Hb_000907_010 Hb_020154_010--Hb_003625_030 Hb_003625_030--Hb_004683_030 Hb_003625_030--Hb_000629_090 Hb_003625_030--Hb_039164_010 Hb_003625_030--Hb_041711_040 Hb_003625_030--Hb_152483_010 Hb_004683_030--Hb_000629_090 Hb_004683_030--Hb_039164_010 Hb_004683_030--Hb_041711_040 Hb_004683_030--Hb_152483_010 Hb_000629_090--Hb_039164_010 Hb_000629_090--Hb_041711_040 Hb_000629_090--Hb_152483_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00707588 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0975742

CAGE analysis