Hb_000540_210

Information

Type -
Description -
Location Contig540: 252857-253997
Sequence    

Annotation

kegg
ID rcu:RCOM_0327860
description hypothetical protein
nr
ID XP_002530242.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SW73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008115_030 0.1676675499 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
3 Hb_003787_050 0.1712643462 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000365_110 0.1867511921 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
5 Hb_003428_040 0.1870759633 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
6 Hb_000574_270 0.188190831 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
7 Hb_000483_050 0.2006921048 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
8 Hb_000953_180 0.2007493192 - - -
9 Hb_150745_010 0.2137499838 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
10 Hb_007101_250 0.2170267248 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
11 Hb_004586_050 0.2224824334 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
12 Hb_000192_030 0.2241064761 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
13 Hb_008948_070 0.2247121596 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
14 Hb_100395_010 0.2265217683 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000340_070 0.2278204359 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
16 Hb_000413_220 0.227877471 - - PREDICTED: kinesin-1 [Jatropha curcas]
17 Hb_006478_140 0.2305710407 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
18 Hb_000000_130 0.231201619 - - Disease resistance-responsive family protein [Theobroma cacao]
19 Hb_000574_180 0.2313834016 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_002078_230 0.2338080878 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_210 Hb_000540_210 Hb_008115_030 Hb_008115_030 Hb_000540_210--Hb_008115_030 Hb_003787_050 Hb_003787_050 Hb_000540_210--Hb_003787_050 Hb_000365_110 Hb_000365_110 Hb_000540_210--Hb_000365_110 Hb_003428_040 Hb_003428_040 Hb_000540_210--Hb_003428_040 Hb_000574_270 Hb_000574_270 Hb_000540_210--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_000540_210--Hb_000483_050 Hb_008115_030--Hb_000365_110 Hb_000953_180 Hb_000953_180 Hb_008115_030--Hb_000953_180 Hb_008115_030--Hb_000574_270 Hb_000192_030 Hb_000192_030 Hb_008115_030--Hb_000192_030 Hb_008948_070 Hb_008948_070 Hb_008115_030--Hb_008948_070 Hb_100395_010 Hb_100395_010 Hb_008115_030--Hb_100395_010 Hb_027065_010 Hb_027065_010 Hb_003787_050--Hb_027065_010 Hb_002435_010 Hb_002435_010 Hb_003787_050--Hb_002435_010 Hb_116420_050 Hb_116420_050 Hb_003787_050--Hb_116420_050 Hb_000000_130 Hb_000000_130 Hb_003787_050--Hb_000000_130 Hb_000340_070 Hb_000340_070 Hb_003787_050--Hb_000340_070 Hb_000365_110--Hb_000953_180 Hb_000365_110--Hb_000574_270 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_100395_010 Hb_000365_110--Hb_000192_030 Hb_000365_110--Hb_008948_070 Hb_002205_160 Hb_002205_160 Hb_003428_040--Hb_002205_160 Hb_001001_010 Hb_001001_010 Hb_003428_040--Hb_001001_010 Hb_004650_040 Hb_004650_040 Hb_003428_040--Hb_004650_040 Hb_007441_290 Hb_007441_290 Hb_003428_040--Hb_007441_290 Hb_001277_120 Hb_001277_120 Hb_003428_040--Hb_001277_120 Hb_000574_270--Hb_000953_180 Hb_000574_270--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000574_270--Hb_150745_010 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_000483_050--Hb_150745_010 Hb_000483_050--Hb_000953_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.652922 2.03751 0.463838 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 0 0 0.166717 0

CAGE analysis