Hb_000544_010

Information

Type -
Description -
Location Contig544: 5691-9213
Sequence    

Annotation

kegg
ID cic:CICLE_v10001079mg
description hypothetical protein
nr
ID XP_012068435.1
description PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
swissprot
ID Q500W7
description GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1
trembl
ID A0A067L9E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03621 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gpi mannosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47902: 5763-8930 , PASA_asmbl_47903: 5763-9168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_010 0.0 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
2 Hb_000665_160 0.0603733901 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
3 Hb_000076_130 0.0629932715 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
4 Hb_034432_030 0.0655662409 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
5 Hb_006445_010 0.0659985119 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
6 Hb_001379_110 0.0677965092 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
7 Hb_002749_110 0.0746068615 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_028308_010 0.0748080397 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
9 Hb_000429_220 0.0765024829 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
10 Hb_012053_080 0.076761424 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_002909_050 0.0772496464 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001623_480 0.0781453115 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
13 Hb_004920_090 0.0789450281 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_008024_030 0.0792219437 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
15 Hb_150651_030 0.0796097012 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
16 Hb_000333_060 0.0797330659 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
17 Hb_003018_130 0.0797561786 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
18 Hb_000107_400 0.0816865491 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
19 Hb_001619_150 0.082053523 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
20 Hb_027380_140 0.0821887467 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_010 Hb_000544_010 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000544_010--Hb_000076_130 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_000665_160--Hb_000076_130 Hb_002909_050 Hb_002909_050 Hb_000665_160--Hb_002909_050 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_002893_070 Hb_002893_070 Hb_000665_160--Hb_002893_070 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_034432_030--Hb_001379_110 Hb_001047_220 Hb_001047_220 Hb_034432_030--Hb_001047_220 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_006445_010--Hb_002749_110 Hb_007426_150 Hb_007426_150 Hb_006445_010--Hb_007426_150 Hb_000429_220 Hb_000429_220 Hb_006445_010--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_006445_010--Hb_000152_260 Hb_028308_010 Hb_028308_010 Hb_006445_010--Hb_028308_010 Hb_001379_110--Hb_001047_220 Hb_001379_110--Hb_000975_040 Hb_000958_140 Hb_000958_140 Hb_001379_110--Hb_000958_140 Hb_027380_140 Hb_027380_140 Hb_001379_110--Hb_027380_140 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67429 5.56507 7.18631 5.84087 13.2226 9.96994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.85662 4.19813 5.38043 6.7337 9.50907

CAGE analysis