Hb_000544_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig544: 11369-14923
Sequence    

Annotation

kegg
ID rcu:RCOM_1298580
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002519373.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID B9S054
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1298580 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rga3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47905: 11887-12015 , PASA_asmbl_47908: 12581-13094 , PASA_asmbl_47909: 13184-14102 , PASA_asmbl_47910: 14257-15680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_020 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_060909_010 0.1133677714 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_158696_010 0.1273288012 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
4 Hb_000984_100 0.1286701755 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_004648_100 0.1316537726 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
6 Hb_001248_110 0.1383865155 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_000532_130 0.1472776683 - - hypothetical protein [Anabaena sp. PCC 7108]
8 Hb_002571_010 0.1476449021 - - cationic amino acid transporter, putative [Ricinus communis]
9 Hb_004466_070 0.1493116717 - - hypothetical protein RCOM_1447500 [Ricinus communis]
10 Hb_036568_010 0.14939259 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
11 Hb_169620_010 0.1521260176 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_001863_450 0.1526779864 - - cryptochrome 1.2 [Populus tremula]
13 Hb_001408_150 0.1570259649 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
14 Hb_000808_160 0.1576480647 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
15 Hb_062229_010 0.1581578079 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_002739_070 0.1591209839 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
17 Hb_004166_010 0.1591593997 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
18 Hb_163658_010 0.1645547548 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_007253_040 0.1655250002 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
20 Hb_000450_180 0.1678086728 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_000544_020 Hb_000544_020 Hb_060909_010 Hb_060909_010 Hb_000544_020--Hb_060909_010 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_004648_100 Hb_004648_100 Hb_000544_020--Hb_004648_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000532_130 Hb_000532_130 Hb_000544_020--Hb_000532_130 Hb_001408_150 Hb_001408_150 Hb_060909_010--Hb_001408_150 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_060909_010--Hb_000532_130 Hb_004106_010 Hb_004106_010 Hb_158696_010--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_158696_010--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_001879_050 Hb_001879_050 Hb_000984_100--Hb_001879_050 Hb_001608_030 Hb_001608_030 Hb_000984_100--Hb_001608_030 Hb_002571_010 Hb_002571_010 Hb_000984_100--Hb_002571_010 Hb_003371_260 Hb_003371_260 Hb_000984_100--Hb_003371_260 Hb_004466_070 Hb_004466_070 Hb_000984_100--Hb_004466_070 Hb_169620_010 Hb_169620_010 Hb_004648_100--Hb_169620_010 Hb_057079_020 Hb_057079_020 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_001248_110--Hb_004466_070 Hb_000566_190 Hb_000566_190 Hb_001248_110--Hb_000566_190 Hb_001248_110--Hb_001608_030 Hb_042553_010 Hb_042553_010 Hb_001248_110--Hb_042553_010 Hb_001248_110--Hb_158696_010 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_008175_030 Hb_008175_030 Hb_000532_130--Hb_008175_030 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52029 22.6525 2.30996 7.48567 0.470126 3.14994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218111 0.257465 0.420638 5.20705 5.01923

CAGE analysis