Hb_000544_030

Information

Type -
Description -
Location Contig544: 19085-21087
Sequence    

Annotation

kegg
ID rcu:RCOM_1072870
description hypothetical protein
nr
ID XP_002533130.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUC9
description Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1
trembl
ID B9T4G1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1072870 PE=4 SV=1
Gene Ontology
ID GO:0031225
description uncharacterized gpi-anchored protein at4g28100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47912: 18985-21070 , PASA_asmbl_47913: 19181-21070
cDNA
(Sanger)
(ID:Location)		 013_L23.ab1: 20534-21070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000948_200 0.1270933738 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
3 Hb_003669_010 0.1572047162 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
4 Hb_002960_150 0.1603850242 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
5 Hb_004093_020 0.1704417682 - - Calcium-binding EF-hand family protein [Theobroma cacao]
6 Hb_008566_040 0.1766375056 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
7 Hb_010488_040 0.1811950428 - - PREDICTED: phosphomannomutase [Populus euphratica]
8 Hb_000261_330 0.1815950767 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
9 Hb_000217_020 0.1833879069 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
10 Hb_007017_080 0.1862513729 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_006405_030 0.1878546074 - - hypothetical protein VITISV_043238 [Vitis vinifera]
12 Hb_003020_210 0.1898956006 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
13 Hb_000123_270 0.1904213594 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010368_050 0.193515748 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
15 Hb_000282_050 0.1939454142 - - calcineurin B, putative [Ricinus communis]
16 Hb_001951_130 0.1946417713 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_003758_020 0.1980509747 - - UGTPg34 [Panax ginseng]
18 Hb_000174_050 0.200758772 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
19 Hb_000300_200 0.2018699027 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
20 Hb_001195_640 0.2020918605 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_030 Hb_000544_030 Hb_000948_200 Hb_000948_200 Hb_000544_030--Hb_000948_200 Hb_003669_010 Hb_003669_010 Hb_000544_030--Hb_003669_010 Hb_002960_150 Hb_002960_150 Hb_000544_030--Hb_002960_150 Hb_004093_020 Hb_004093_020 Hb_000544_030--Hb_004093_020 Hb_008566_040 Hb_008566_040 Hb_000544_030--Hb_008566_040 Hb_010488_040 Hb_010488_040 Hb_000544_030--Hb_010488_040 Hb_000217_020 Hb_000217_020 Hb_000948_200--Hb_000217_020 Hb_000123_270 Hb_000123_270 Hb_000948_200--Hb_000123_270 Hb_000005_110 Hb_000005_110 Hb_000948_200--Hb_000005_110 Hb_003020_210 Hb_003020_210 Hb_000948_200--Hb_003020_210 Hb_083380_020 Hb_083380_020 Hb_000948_200--Hb_083380_020 Hb_045770_010 Hb_045770_010 Hb_003669_010--Hb_045770_010 Hb_003758_020 Hb_003758_020 Hb_003669_010--Hb_003758_020 Hb_000004_010 Hb_000004_010 Hb_003669_010--Hb_000004_010 Hb_003669_010--Hb_008566_040 Hb_003669_010--Hb_002960_150 Hb_003669_010--Hb_003020_210 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_001951_130 Hb_001951_130 Hb_004093_020--Hb_001951_130 Hb_001377_450 Hb_001377_450 Hb_004093_020--Hb_001377_450 Hb_000365_130 Hb_000365_130 Hb_004093_020--Hb_000365_130 Hb_004093_020--Hb_083380_020 Hb_001056_030 Hb_001056_030 Hb_004093_020--Hb_001056_030 Hb_001863_130 Hb_001863_130 Hb_004093_020--Hb_001863_130 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_001005_160 Hb_001005_160 Hb_010488_040--Hb_001005_160 Hb_000742_190 Hb_000742_190 Hb_010488_040--Hb_000742_190 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4355 4.52853 73.2992 84.0074 9.47314 21.2913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.2244 26.5335 10.6598 7.21745 9.34018

CAGE analysis