Hb_000544_040

Information

Type -
Description -
Location Contig544: 33514-47693
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04380g
description POPTRDRAFT_251530; MAP KINASE 9 family protein
nr
ID XP_012068439.1
description PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
swissprot
ID Q9C9U4
description Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=1 SV=3
trembl
ID A0A067KY95
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_03628 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mitogen-activated protein kinase 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47916: 33341-47559 , PASA_asmbl_47917: 33933-47559 , PASA_asmbl_47919: 42320-42589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_040 0.0 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
2 Hb_000849_150 0.1115959131 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
3 Hb_005725_070 0.1144142202 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007305_010 0.1154492933 - - PREDICTED: girdin-like [Jatropha curcas]
5 Hb_000300_540 0.1160850464 - - PREDICTED: syntaxin-132 [Jatropha curcas]
6 Hb_007786_010 0.1221580042 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
7 Hb_000173_370 0.1267014605 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_012977_010 0.1289628184 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
9 Hb_001846_060 0.1307257911 - - hypothetical protein RCOM_0992860 [Ricinus communis]
10 Hb_000392_280 0.1351970976 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
11 Hb_000742_250 0.1355514994 - - Tubulin beta-6 chain [Gossypium arboreum]
12 Hb_000025_750 0.1365225129 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
13 Hb_002025_140 0.1371226971 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_000540_140 0.1377152433 - - zinc binding dehydrogenase, putative [Ricinus communis]
15 Hb_004032_460 0.1385274995 - - -
16 Hb_000465_120 0.1388706701 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
17 Hb_000173_210 0.1389876073 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
18 Hb_002897_040 0.1404916461 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
19 Hb_002192_070 0.1408197592 - - -
20 Hb_000329_390 0.1413089782 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000544_040 Hb_000544_040 Hb_000849_150 Hb_000849_150 Hb_000544_040--Hb_000849_150 Hb_005725_070 Hb_005725_070 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370 Hb_000025_750 Hb_000025_750 Hb_000849_150--Hb_000025_750 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_001408_090 Hb_001408_090 Hb_000849_150--Hb_001408_090 Hb_002897_040 Hb_002897_040 Hb_000849_150--Hb_002897_040 Hb_000849_150--Hb_005725_070 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_001226_180 Hb_001226_180 Hb_007305_010--Hb_001226_180 Hb_003125_060 Hb_003125_060 Hb_007305_010--Hb_003125_060 Hb_033594_020 Hb_033594_020 Hb_007305_010--Hb_033594_020 Hb_000236_280 Hb_000236_280 Hb_007305_010--Hb_000236_280 Hb_007305_010--Hb_000025_750 Hb_000104_080 Hb_000104_080 Hb_007305_010--Hb_000104_080 Hb_000300_540--Hb_007786_010 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000363_340 Hb_000363_340 Hb_000300_540--Hb_000363_340 Hb_000300_540--Hb_000173_370 Hb_007786_010--Hb_002818_040 Hb_007786_010--Hb_012977_010 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_007786_010--Hb_005725_070 Hb_000173_370--Hb_002025_140 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
173.222 21.6559 31.2457 17.776 159.888 73.9648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2305 23.2508 49.5358 12.9985 17.5977

CAGE analysis