Hb_000544_050

Information

Type -
Description -
Location Contig544: 66384-69485
Sequence    

Annotation

kegg
ID vvi:100854850
description serine/threonine-protein kinase EDR1
nr
ID XP_012068442.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067KY58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03632 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase edr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47920: 66413-109553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_050 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_000574_070 0.0832344484 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
3 Hb_085781_020 0.0945276637 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
4 Hb_001913_060 0.1008871754 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
5 Hb_003060_060 0.1017984012 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
6 Hb_001357_270 0.1027888852 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
7 Hb_000723_220 0.1063728757 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
8 Hb_017358_040 0.1079213138 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
9 Hb_004117_310 0.1094346449 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
10 Hb_001529_040 0.1098532997 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
11 Hb_010417_050 0.1100528938 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
12 Hb_003294_090 0.1136275298 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006637_050 0.1167330082 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
14 Hb_011287_080 0.1172063054 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003988_010 0.1177266738 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
16 Hb_001199_100 0.118350234 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
17 Hb_000613_080 0.1185032808 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
18 Hb_071130_010 0.119500967 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
19 Hb_005901_020 0.1205330925 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
20 Hb_001780_090 0.1207346208 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_050 Hb_000544_050 Hb_000574_070 Hb_000574_070 Hb_000544_050--Hb_000574_070 Hb_085781_020 Hb_085781_020 Hb_000544_050--Hb_085781_020 Hb_001913_060 Hb_001913_060 Hb_000544_050--Hb_001913_060 Hb_003060_060 Hb_003060_060 Hb_000544_050--Hb_003060_060 Hb_001357_270 Hb_001357_270 Hb_000544_050--Hb_001357_270 Hb_000723_220 Hb_000723_220 Hb_000544_050--Hb_000723_220 Hb_001472_090 Hb_001472_090 Hb_000574_070--Hb_001472_090 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000574_070--Hb_001913_060 Hb_010417_050 Hb_010417_050 Hb_000574_070--Hb_010417_050 Hb_071130_010 Hb_071130_010 Hb_085781_020--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_085781_020--Hb_000230_260 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_085781_020--Hb_003060_060 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_002784_110 Hb_002784_110 Hb_001913_060--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_041327_010 Hb_041327_010 Hb_003060_060--Hb_041327_010 Hb_002454_020 Hb_002454_020 Hb_001357_270--Hb_002454_020 Hb_000739_220 Hb_000739_220 Hb_001357_270--Hb_000739_220 Hb_000600_070 Hb_000600_070 Hb_001357_270--Hb_000600_070 Hb_000613_080 Hb_000613_080 Hb_001357_270--Hb_000613_080 Hb_000158_100 Hb_000158_100 Hb_001357_270--Hb_000158_100 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_017358_040 Hb_017358_040 Hb_000723_220--Hb_017358_040 Hb_001195_470 Hb_001195_470 Hb_000723_220--Hb_001195_470 Hb_000723_220--Hb_085781_020 Hb_000723_220--Hb_071130_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29763 7.82792 1.48547 5.50755 7.08553 11.9306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25667 2.74691 7.27652 8.94835 5.45551

CAGE analysis