Hb_000544_110

Information

Type -
Description -
Location Contig544: 156535-157026
Sequence    

Annotation

kegg
ID tcc:TCM_012743
description Calcium-binding EF-hand family protein
nr
ID XP_012088541.1
description PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
swissprot
ID Q9LE22
description Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1
trembl
ID A0A067JJ61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27077 PE=4 SV=1
Gene Ontology
ID GO:0005773
description probable calcium-binding protein cml27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47932: 156371-157136
cDNA
(Sanger)
(ID:Location)		 002_L11.ab1: 156401-157133 , 012_C14.ab1: 156419-157028 , 017_K04.ab1: 156699-157081 , 022_F10.ab1: 156371-157049 , 033_M21.ab1: 156389-157107 , 048_B12.ab1: 156384-157050 , 049_J08.ab1: 156371-157050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_110 0.0 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
2 Hb_005137_020 0.0530811973 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
3 Hb_072912_020 0.0693488272 - - abhydrolase domain containing, putative [Ricinus communis]
4 Hb_001102_250 0.097931815 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
5 Hb_078633_010 0.0996783776 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
6 Hb_008066_040 0.1172258108 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
7 Hb_005908_040 0.118337121 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
8 Hb_004297_040 0.1183809411 - - acyl CoA reductase [Hevea brasiliensis]
9 Hb_001268_080 0.1338017257 - - catalytic, putative [Ricinus communis]
10 Hb_005615_070 0.1381357727 - - Rab7 [Hevea brasiliensis]
11 Hb_089100_020 0.1396527456 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
12 Hb_000175_130 0.1406209394 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
13 Hb_103752_010 0.1407951785 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
14 Hb_002326_180 0.1408323124 - - Protein Z, putative [Ricinus communis]
15 Hb_002045_230 0.1410337253 - - Ammonium transporter 2 [Theobroma cacao]
16 Hb_000696_220 0.14214138 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
17 Hb_003211_050 0.1430541679 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
18 Hb_089100_030 0.1437656036 - - -
19 Hb_011689_050 0.1445488933 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
20 Hb_010172_100 0.14456081 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]

Gene co-expression network

sample Hb_000544_110 Hb_000544_110 Hb_005137_020 Hb_005137_020 Hb_000544_110--Hb_005137_020 Hb_072912_020 Hb_072912_020 Hb_000544_110--Hb_072912_020 Hb_001102_250 Hb_001102_250 Hb_000544_110--Hb_001102_250 Hb_078633_010 Hb_078633_010 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_005908_040 Hb_005908_040 Hb_000544_110--Hb_005908_040 Hb_005137_020--Hb_072912_020 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005137_020--Hb_004297_040 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_078633_010 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_004297_040 Hb_078633_010--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_008066_040--Hb_005137_020 Hb_001935_030 Hb_001935_030 Hb_008066_040--Hb_001935_030 Hb_008066_040--Hb_001268_080 Hb_008066_040--Hb_078633_010 Hb_008066_040--Hb_072912_020 Hb_002045_230 Hb_002045_230 Hb_008066_040--Hb_002045_230 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_005908_040--Hb_003095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
794.519 26.0495 39.6382 160.526 212.413 292.691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1467.93 2469.34 1000.77 158.603 10.8913

CAGE analysis