Hb_000544_130

Information

Type -
Description -
Location Contig544: 171895-173099
Sequence    

Annotation

kegg
ID cmo:103501835
description thaumatin-like protein
nr
ID XP_012088543.1
description PREDICTED: thaumatin-like protein [Jatropha curcas]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID A0A067JWI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27079 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47935: 171919-173097
cDNA
(Sanger)
(ID:Location)		 011_G05.ab1: 172051-173017 , 031_A13.ab1: 172087-173097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_130 0.0 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
2 Hb_003226_050 0.1091670098 - - Pectinesterase-3 precursor, putative [Ricinus communis]
3 Hb_000161_230 0.120900817 - - lactoylglutathione lyase, putative [Ricinus communis]
4 Hb_002217_040 0.1255278826 - - PREDICTED: boron transporter 1-like [Jatropha curcas]
5 Hb_000187_110 0.1337672456 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
6 Hb_000979_080 0.1421585541 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
7 Hb_001252_070 0.1426357806 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
8 Hb_001633_120 0.1433649683 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
9 Hb_004984_020 0.1483394677 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
10 Hb_002437_010 0.150798097 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
11 Hb_055440_010 0.1604890594 - - protein binding protein, putative [Ricinus communis]
12 Hb_000364_130 0.1623623634 - - unnamed protein product [Vitis vinifera]
13 Hb_006834_010 0.1733050377 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000705_110 0.1735110399 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
15 Hb_009780_110 0.1768528174 - - PREDICTED: protein RSI-1 [Cicer arietinum]
16 Hb_021888_010 0.1814199291 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
17 Hb_001002_090 0.1815411927 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
18 Hb_003768_100 0.1819162252 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
19 Hb_005144_080 0.1820312895 - - Serine carboxypeptidase, putative [Ricinus communis]
20 Hb_002559_010 0.1850287062 - - hypothetical protein JCGZ_06274 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_130 Hb_000544_130 Hb_003226_050 Hb_003226_050 Hb_000544_130--Hb_003226_050 Hb_000161_230 Hb_000161_230 Hb_000544_130--Hb_000161_230 Hb_002217_040 Hb_002217_040 Hb_000544_130--Hb_002217_040 Hb_000187_110 Hb_000187_110 Hb_000544_130--Hb_000187_110 Hb_000979_080 Hb_000979_080 Hb_000544_130--Hb_000979_080 Hb_001252_070 Hb_001252_070 Hb_000544_130--Hb_001252_070 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_003768_100 Hb_003768_100 Hb_003226_050--Hb_003768_100 Hb_003226_050--Hb_000979_080 Hb_003226_050--Hb_000187_110 Hb_003226_050--Hb_000161_230 Hb_000161_230--Hb_000187_110 Hb_001633_120 Hb_001633_120 Hb_000161_230--Hb_001633_120 Hb_001158_110 Hb_001158_110 Hb_000161_230--Hb_001158_110 Hb_003020_340 Hb_003020_340 Hb_000161_230--Hb_003020_340 Hb_002217_040--Hb_001252_070 Hb_005839_030 Hb_005839_030 Hb_002217_040--Hb_005839_030 Hb_055440_010 Hb_055440_010 Hb_002217_040--Hb_055440_010 Hb_003674_020 Hb_003674_020 Hb_002217_040--Hb_003674_020 Hb_002592_050 Hb_002592_050 Hb_002217_040--Hb_002592_050 Hb_000187_110--Hb_000979_080 Hb_001002_090 Hb_001002_090 Hb_000187_110--Hb_001002_090 Hb_000187_110--Hb_055440_010 Hb_000187_110--Hb_001633_120 Hb_000979_080--Hb_001002_090 Hb_000979_080--Hb_003768_100 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110 Hb_005144_080 Hb_005144_080 Hb_001252_070--Hb_005144_080 Hb_000696_030 Hb_000696_030 Hb_001252_070--Hb_000696_030 Hb_001252_070--Hb_005839_030 Hb_001157_190 Hb_001157_190 Hb_001252_070--Hb_001157_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54191 3.44822 32.612 50.6193 1.94285 0.475122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.882495 0.231365 0.071099 69.3969 2.45007

CAGE analysis