Hb_000544_140

Information

Type -
Description -
Location Contig544: 182189-182533
Sequence    

Annotation

kegg
ID sly:101245866
description uncharacterized LOC101245866
nr
ID XP_004245298.1
description PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID K4CMB7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068970.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_140 0.0 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
2 Hb_010626_020 0.1201684863 - - -
3 Hb_005735_010 0.2043365978 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
4 Hb_000370_010 0.2120992973 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_001650_010 0.2279625491 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_123521_010 0.2345590241 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_001021_060 0.3054965056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_179112_010 0.3107641492 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
9 Hb_002988_020 0.3145427491 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
10 Hb_030630_010 0.3145783072 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
11 Hb_000204_200 0.3190828951 - - hypothetical protein VITISV_019818 [Vitis vinifera]
12 Hb_005914_240 0.3196839659 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
13 Hb_140572_010 0.3246822165 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
14 Hb_009474_010 0.3428125154 - - -
15 Hb_007768_030 0.3518424474 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_006344_010 0.3592425013 - - -
17 Hb_003952_140 0.3649849861 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
18 Hb_001623_520 0.369069834 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
19 Hb_017134_020 0.3704105902 - - -
20 Hb_062482_010 0.3704972858 - - -

Gene co-expression network

sample Hb_000544_140 Hb_000544_140 Hb_010626_020 Hb_010626_020 Hb_000544_140--Hb_010626_020 Hb_005735_010 Hb_005735_010 Hb_000544_140--Hb_005735_010 Hb_000370_010 Hb_000370_010 Hb_000544_140--Hb_000370_010 Hb_001650_010 Hb_001650_010 Hb_000544_140--Hb_001650_010 Hb_123521_010 Hb_123521_010 Hb_000544_140--Hb_123521_010 Hb_001021_060 Hb_001021_060 Hb_000544_140--Hb_001021_060 Hb_010626_020--Hb_000370_010 Hb_030630_010 Hb_030630_010 Hb_010626_020--Hb_030630_010 Hb_000204_200 Hb_000204_200 Hb_010626_020--Hb_000204_200 Hb_010626_020--Hb_123521_010 Hb_009474_010 Hb_009474_010 Hb_010626_020--Hb_009474_010 Hb_002988_020 Hb_002988_020 Hb_005735_010--Hb_002988_020 Hb_017134_020 Hb_017134_020 Hb_005735_010--Hb_017134_020 Hb_179112_010 Hb_179112_010 Hb_005735_010--Hb_179112_010 Hb_000094_060 Hb_000094_060 Hb_005735_010--Hb_000094_060 Hb_005735_010--Hb_001650_010 Hb_000370_010--Hb_030630_010 Hb_000370_010--Hb_000204_200 Hb_000370_010--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_000370_010--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_000370_010--Hb_000661_190 Hb_172112_010 Hb_172112_010 Hb_001650_010--Hb_172112_010 Hb_001650_010--Hb_010626_020 Hb_005656_060 Hb_005656_060 Hb_001650_010--Hb_005656_060 Hb_002890_230 Hb_002890_230 Hb_001650_010--Hb_002890_230 Hb_123521_010--Hb_000370_010 Hb_140572_010 Hb_140572_010 Hb_123521_010--Hb_140572_010 Hb_003446_040 Hb_003446_040 Hb_123521_010--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_123521_010--Hb_006344_010 Hb_001021_060--Hb_006344_010 Hb_001021_060--Hb_140572_010 Hb_000252_030 Hb_000252_030 Hb_001021_060--Hb_000252_030 Hb_003952_140 Hb_003952_140 Hb_001021_060--Hb_003952_140 Hb_005914_240 Hb_005914_240 Hb_001021_060--Hb_005914_240 Hb_007753_020 Hb_007753_020 Hb_001021_060--Hb_007753_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.490771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.321738 0 0

CAGE analysis