Hb_000544_180

Information

Type -
Description -
Location Contig544: 272171-275672
Sequence    

Annotation

kegg
ID tcc:TCM_012854
description Auxin efflux facilitator isoform 1
nr
ID XP_012088550.1
description PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
swissprot
ID Q9C6B8
description Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1
trembl
ID A0A067JV99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27085 PE=4 SV=1
Gene Ontology
ID GO:0005737
description auxin efflux carrier component 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47939: 273205-275568
cDNA
(Sanger)
(ID:Location)		 048_M15.ab1: 270418-271173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_180 0.0 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
2 Hb_130323_010 0.1333847273 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
3 Hb_002217_380 0.1521690754 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
4 Hb_009485_020 0.1540589468 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
5 Hb_002235_130 0.1549580478 - - conserved hypothetical protein [Ricinus communis]
6 Hb_086022_010 0.1594775552 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
7 Hb_002783_250 0.1718535669 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
8 Hb_004466_040 0.1724696562 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
9 Hb_003858_040 0.1729025403 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
10 Hb_001396_280 0.1736016703 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
11 Hb_003177_010 0.1758060503 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
12 Hb_000556_150 0.1760534439 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
13 Hb_162378_010 0.1767370848 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
14 Hb_029866_100 0.1767967763 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
15 Hb_000853_260 0.1804363761 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
16 Hb_004375_130 0.1805631264 - - kinesin heavy chain, putative [Ricinus communis]
17 Hb_010053_040 0.1808090015 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
18 Hb_000091_060 0.1812752025 - - PREDICTED: galactose oxidase [Jatropha curcas]
19 Hb_001882_110 0.1818224965 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_008511_060 0.1882844174 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_180 Hb_000544_180 Hb_130323_010 Hb_130323_010 Hb_000544_180--Hb_130323_010 Hb_002217_380 Hb_002217_380 Hb_000544_180--Hb_002217_380 Hb_009485_020 Hb_009485_020 Hb_000544_180--Hb_009485_020 Hb_002235_130 Hb_002235_130 Hb_000544_180--Hb_002235_130 Hb_086022_010 Hb_086022_010 Hb_000544_180--Hb_086022_010 Hb_002783_250 Hb_002783_250 Hb_000544_180--Hb_002783_250 Hb_130323_010--Hb_009485_020 Hb_003858_040 Hb_003858_040 Hb_130323_010--Hb_003858_040 Hb_000300_320 Hb_000300_320 Hb_130323_010--Hb_000300_320 Hb_001396_280 Hb_001396_280 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170 Hb_002217_380--Hb_086022_010 Hb_008511_060 Hb_008511_060 Hb_002217_380--Hb_008511_060 Hb_000556_150 Hb_000556_150 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_076874_010 Hb_076874_010 Hb_002217_380--Hb_076874_010 Hb_009485_020--Hb_003858_040 Hb_009485_020--Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_018954_020 Hb_018954_020 Hb_002235_130--Hb_018954_020 Hb_008406_140 Hb_008406_140 Hb_002235_130--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_002235_130--Hb_000497_230 Hb_003376_050 Hb_003376_050 Hb_002235_130--Hb_003376_050 Hb_005271_080 Hb_005271_080 Hb_002235_130--Hb_005271_080 Hb_001279_330 Hb_001279_330 Hb_002235_130--Hb_001279_330 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_086022_010--Hb_000556_150 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_002783_250--Hb_130323_010 Hb_003177_010 Hb_003177_010 Hb_002783_250--Hb_003177_010 Hb_001266_070 Hb_001266_070 Hb_002783_250--Hb_001266_070 Hb_002783_250--Hb_002235_130 Hb_000281_060 Hb_000281_060 Hb_002783_250--Hb_000281_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.951 4.14923 9.01975 25.1411 13.748 11.8658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31195 2.38128 1.84676 2.35764 3.71218

CAGE analysis