Hb_000548_030

Information

Type rubber biosynthesis
Description Gene Name: CPT5
Location Contig548: 44871-46662
Sequence    

Annotation

kegg
ID bvg:104908679
description dehydrodolichyl diphosphate synthase 6-like
nr
ID XP_010696123.1
description PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
swissprot
ID Q5JGE1
description Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=uppS PE=3 SV=1
trembl
ID M0STD7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1
Gene Ontology
ID GO:0050267
description dehydrodolichyl diphosphate synthase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48037: 45162-64674 , PASA_asmbl_48038: 45162-64674 , PASA_asmbl_48040: 45164-47054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000548_030 0.0 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
2 Hb_003304_050 0.1587047628 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
3 Hb_000641_030 0.1612080186 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_100414_010 0.1667230929 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
5 Hb_000139_330 0.1672986505 - - short chain dehydrogenase, putative [Ricinus communis]
6 Hb_000959_360 0.1732237942 - - transporter, putative [Ricinus communis]
7 Hb_003654_010 0.1758918854 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
8 Hb_027380_040 0.1767997346 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
9 Hb_002027_220 0.1803234153 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_007044_210 0.1847413329 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
11 Hb_004286_040 0.1847520433 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
12 Hb_006120_200 0.1869412348 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
13 Hb_000920_140 0.1890857091 - - annexin [Manihot esculenta]
14 Hb_000376_110 0.1895504446 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
15 Hb_023988_020 0.1913738132 - - PREDICTED: transmembrane protein 19 [Prunus mume]
16 Hb_000373_290 0.1928700115 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
17 Hb_000032_240 0.1956936076 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002876_030 0.1960052779 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
19 Hb_085892_020 0.197655793 - - -
20 Hb_003687_200 0.1997983143 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]

Gene co-expression network

sample Hb_000548_030 Hb_000548_030 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_003304_050--Hb_000641_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003304_050--Hb_003654_010 Hb_002027_220 Hb_002027_220 Hb_003304_050--Hb_002027_220 Hb_000376_110 Hb_000376_110 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_000641_030--Hb_003687_200 Hb_000920_140 Hb_000920_140 Hb_000641_030--Hb_000920_140 Hb_000416_100 Hb_000416_100 Hb_000641_030--Hb_000416_100 Hb_006120_200 Hb_006120_200 Hb_100414_010--Hb_006120_200 Hb_004286_040 Hb_004286_040 Hb_100414_010--Hb_004286_040 Hb_000018_190 Hb_000018_190 Hb_100414_010--Hb_000018_190 Hb_027380_040 Hb_027380_040 Hb_100414_010--Hb_027380_040 Hb_003018_140 Hb_003018_140 Hb_100414_010--Hb_003018_140 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_006501_110 Hb_006501_110 Hb_000139_330--Hb_006501_110 Hb_002876_030 Hb_002876_030 Hb_000139_330--Hb_002876_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130 Hb_002388_060 Hb_002388_060 Hb_000959_360--Hb_002388_060 Hb_000959_360--Hb_000641_030 Hb_002094_020 Hb_002094_020 Hb_000959_360--Hb_002094_020 Hb_001980_020 Hb_001980_020 Hb_000959_360--Hb_001980_020 Hb_000373_290 Hb_000373_290 Hb_000959_360--Hb_000373_290 Hb_028358_010 Hb_028358_010 Hb_003654_010--Hb_028358_010 Hb_003654_010--Hb_002027_220 Hb_000956_130 Hb_000956_130 Hb_003654_010--Hb_000956_130 Hb_004705_040 Hb_004705_040 Hb_003654_010--Hb_004705_040 Hb_004007_160 Hb_004007_160 Hb_003654_010--Hb_004007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
146.473 3.50142 8.16422 42.6319 40.9169 39.3053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.2452 27.178 25.1991 0.551612 6.96938

CAGE analysis